Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00177 ATGACTCCGATCGAAACCCCTATTCAACAACAACAACAGCAACGTTCATCGTCGAAACGGAAATTAGACGATGACGATGAAAGCGTGTTAGATGATGACTTAGTGTATGTGAGAATGAGAAAGGAGGAGACAACGGAAACAACAGTTAAGCCGTGGAGCGGAGGAGGTTGCCGTGGCGGAGGTGGCGACGGAAACAACAGTTTGTTGAAGAATAGAGGACCGGTTTGTTTTTTCATTCGCATGGTTTCGGAAGGATACAGTGTTGTGATGAACGCTTTTCCGGAAACTACTGTGCAATCAATTCATGAACGGATATATGAAATGAAGAGAATTCCTGTTTACGAACAGAGGTTGATTTTCAAAGGTAAACAGCTTCAGTGGGAACAAACTCTGGCGGAGTGTGGTATACAGAAGGATGTGATTCTTGAACTGGTTGGTCGAATGCGGAGTACGGAGCATCCTCAAGCGTGGCAAGTTGTGAATGATATGGTTACTATTGCTTATGATCTTTGTGTTGGTGGGAATGTTGAGGAACCTGTTAAAACTGTGAAGAATTTACTCACTACTTATATTAATCTGGCTTTGACACCGAAAGCGAAACATGATTCTGATTCTGCTAATAAGTATTTCCAGATTTTCATGAATTGTTCGGCTATATCGATTCTGGTTACTCTCTATGTTTCGCCGTTTGCAGGTAACAAGACCTGCTCTGATACTTGTATTAGGCATTTTTTGAGTTGTTGTAGGACTACATTGTCCGAGACATTTCATACTCAGGCTGCGCGTGTGGCGTTGGAGTTTTGTAAATTGCTTAGGAGAGTAGGGACTCATGATCCTTTGTATATCTATTGTCGGAATTCTTTGGGGTTTTTCTTGGAACGTTCTGAAATTTCACTTGCTCCTTCTGAGGATCAGAATGAGAAAGGTTCGGTGTTAGTTCAAGATTTATTCCCGTTTGTTCGTGAACTTGCTGATAGTTTGTTGATGGATTTGGATATGAGCATTGATACACCTTCCTTTACTTGTCCTGTGACGAGCAATGTTGGTGATTTTGCTGCCTTTTTAGTTCAGGTGAGGAATGGAATCAAGAAGCAACAGATTCTCCGTGGTGGTTTTGTACCTTACAACAAGGTTGGAAAGAACAGCTTGGTCCTTAAAGAGATTGAATACCTTTTTCTGTTGTACGATCAGATGTTGTGCAAAATTGAAATTTGCCTTCAAAAAATGGATAAGAGATTCGTTAACAAGGAAATGTCTCATGAGGAGAATTATTTTCATCCTGCATGCTCTCTCTATCTTTCCGTTTTGAAGGAGTTGCATAAGATTTCTAAGCTTTATGATGGTGCTTCAGAAAAGCTCCAGGGCGTTTTGACGCGTCAAAAGACTGTGCTGTGTCAGCTGCTCGTTAAATATGCAAAGAGGACCGATGAGCATCAGTGGATTCTCGAGCACAAGAATGTTACCAATTTCGAGGCTAGGAGGCATTTGGCCATGATGATGTTCCCGGAGGTTAAGGAAGACTATGAAGAGCTACATGAGATGCTCATTGACAGGTCTCAGTTGTTAACTGAATCTTTTGAATACGTCGCACGGGCTGAGCCTGAGTCACTGCGTGCTGGCCTCTTTATGGAATTCAAAAATGAGGAAGCCACTGGCCCCGGTGTGCTGAGGGAGTGGTTCCTTTTGGTTTGTCAAGCAATATTCAATCAGGAAAATGCTCTTTTTGTTTCCAGCCCAAATGATAAAACGAGATTTCTCCCTAATTCTGCTTCCAAGGTGCATCCTCTGCATCTTGAGTACTTCAGCTTCTGTGGTCGAGTTATTGCATTAGCTTTGATGCATGGGGTGCAAGTAGGTATTGTTTTTGATCGGGTGTTTTTCTTGCAATTGGCTGGAAAGTCTATTACTGTTGAAGATATAAAGGATGCAGATCCTGAGCTTTATAGAAGCTGCAAGCAGATATTGGACATGGATTCTGATCTAGTTGATTCAGATGCATTAGGATTGACATTTGTTAGAGAAGTGGATGAATTAGGACACAGGAAAGTGATCGAGCTCTATCCCGGTGGAAAAGATGTTGTAGTTACTAGTAAGAACAGGGCGAAGTATATTTGTCTTCTTATACAAAATCGCTTTGTAACATCCATAGCTCAGCAGGTGTCACACTTTGCCAAAGGTTTTGCTGATATTCTCTCAAGTACAAACCTCCGAACGTCCTTTTTTCAAGGTTTAGATCCCGAAGATCTTGATTGGATGCTACGTGGGAGCAAAGATGCCATTTCTGTCGAAGATTGGAAAAAACACACTGAATATAATGGCTATAAAGAGACTGATATTCAGATATCTTGGTTTTGGGAGATAGTGGGGAAAATGACAGCCGAAGAAAAGAAAATTCTCCTTTTCTTTTGGACATCTGTGAAATATTTACCAGTTGAAGGCTTCTGTGGTTTGGGTTCCCATCTCTACATTTACAAGTCCCATGAATCTGGTGATCACCTTCCTTCATCTCACACATGCTTTTACCGGCTGTGTTTCCCAGCTTATTCATCAATGCCTGTCATGCAAGCTCGTCTCAAAGTCATTACTCAAGAACATATTGGCAGTAGTTTTGGTACTTGGTGA 2622 0.4157 MTPIETPIQQQQQQRSSSKRKLDDDDESVLDDDLVYVRMRKEETTETTVKPWSGGGCRGGGGDGNNSLLKNRGPVCFFIRMVSEGYSVVMNAFPETTVQSIHERIYEMKRIPVYEQRLIFKGKQLQWEQTLAECGIQKDVILELVGRMRSTEHPQAWQVVNDMVTIAYDLCVGGNVEEPVKTVKNLLTTYINLALTPKAKHDSDSANKYFQIFMNCSAISILVTLYVSPFAGNKTCSDTCIRHFLSCCRTTLSETFHTQAARVALEFCKLLRRVGTHDPLYIYCRNSLGFFLERSEISLAPSEDQNEKGSVLVQDLFPFVRELADSLLMDLDMSIDTPSFTCPVTSNVGDFAAFLVQVRNGIKKQQILRGGFVPYNKVGKNSLVLKEIEYLFLLYDQMLCKIEICLQKMDKRFVNKEMSHEENYFHPACSLYLSVLKELHKISKLYDGASEKLQGVLTRQKTVLCQLLVKYAKRTDEHQWILEHKNVTNFEARRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYVARAEPESLRAGLFMEFKNEEATGPGVLREWFLLVCQAIFNQENALFVSSPNDKTRFLPNSASKVHPLHLEYFSFCGRVIALALMHGVQVGIVFDRVFFLQLAGKSITVEDIKDADPELYRSCKQILDMDSDLVDSDALGLTFVREVDELGHRKVIELYPGGKDVVVTSKNRAKYICLLIQNRFVTSIAQQVSHFAKGFADILSSTNLRTSFFQGLDPEDLDWMLRGSKDAISVEDWKKHTEYNGYKETDIQISWFWEIVGKMTAEEKKILLFFWTSVKYLPVEGFCGLGSHLYIYKSHESGDHLPSSHTCFYRLCFPAYSSMPVMQARLKVITQEHIGSSFGTW 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00177 873 SMART ubq_7 75 147 IPR000626 GO:0005515
Vivi1g00177 873 MobiDBLite consensus disorder prediction 1 27 - -
Vivi1g00177 873 Pfam HECT-domain (ubiquitin-transferase) 562 865 IPR000569 GO:0004842
Vivi1g00177 873 SMART hect_3 531 871 IPR000569 GO:0004842
Vivi1g00177 873 ProSiteProfiles Ubiquitin domain profile. 75 151 IPR000626 GO:0005515
Vivi1g00177 873 SUPERFAMILY Hect, E3 ligase catalytic domain 508 859 IPR035983 GO:0004842
Vivi1g00177 873 Gene3D Hect, E3 ligase catalytic domain 633 715 - -
Vivi1g00177 873 CDD HECTc 512 871 IPR000569 GO:0004842
Vivi1g00177 873 Gene3D - 79 148 - -
Vivi1g00177 873 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 78 871 - -
Vivi1g00177 873 SUPERFAMILY Ubiquitin-like 77 163 IPR029071 -
Vivi1g00177 873 Gene3D Hect, E3 ligase catalytic domains 513 755 - -
Vivi1g00177 873 MobiDBLite consensus disorder prediction 1 16 - -
Vivi1g00177 873 FunFam E3 ubiquitin-protein ligase UPL5 757 872 - -
Vivi1g00177 873 ProSiteProfiles HECT domain profile. 533 873 IPR000569 GO:0004842
Vivi1g00177 873 Pfam Ubiquitin family 78 149 IPR000626 GO:0005515
Vivi1g00177 873 Gene3D Hect, E3 ligase catalytic domain 756 872 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00177 Vivi-Chr1 3516563 3523660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00177 77 150 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 35.135 1.38e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00177 - - gmx:100789233 1153.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00177 1 3516563 3523660 Vivi1g00177 1 3516563 3523660 PCT