LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g00163	ATGGCTTATAGACGCTGCCTCTTGCAAAGAGGAAGCAACCTCATAGATCGTAGGTTTCACCCTTCTTTCACCTATGCTCTCCATAGCGACGAAGTGAAACGCGAAAAGCCCGAAGAGAAACCGTCTTTAGCAGGAATCAGTAATAGTTTTATTCAAACAAGATCCTTTGGAAGCTCTTTTAATGGATCAATGGGGTTTTCCTCGGGTTTTCGACATAAGGAAATTTATCCATTCGCTGGATATAATTTCTGCCGGAGTATGTCGACGATGGATCAGAATCCGGATAAAATTACAGTAATGACTGATGTGGCTGATGTTCTTACTGACACTGCTGTGGAGACTGTAACTTCTCAGGCTGCTCCTGTTGTTAGCGAAGTTGCCATTGCTGCTGCTGATTCTTATTTGCCTGTACAAGCTTTGCAGTATTTCATAGATGCTGTTCATTCCTACACTGGGCTAAACTGGTGGGCGGCCATAGCTCTAACGACTCTCTTGATTCGAACTGCAACTGTTCCACTCTTAATAAATCAACTCAAGACCACTTCTAAGCTTACGCTTATGAGGCCTCACTTGGAAGCGATAAAGGAAGAGATGGATGGGAAGACATTTGATCCCGAGGCTGTTGCCGAAGGTCAGAAGCGGATGAAAAGGCTATTCAAAGAATATGGTGTGAGTCCTCTTTCGCCATTGAAGGGACTTTTTATTCAAGGTCCTGTCTTCATTAGTTTTTTTCTTGCGATAAATAACATGTCTGAAAAAATGCCATCATTCAAGAATGGTGGAGCTTTCTGGTTTACCGATCTCACAACTCCCGATGCCTTATACATTTTTCCAGTTTTGGCTGCATTATCATTCTTAGTAGTAGTAGAGTGTAATATGCAAGAAGGAATGGAAGGAAATCCTATGGGTGACACAATGAAAAAATTCTCGAGGATTCTTGCTTTTTTGACAGTTCCGTTCACCATGACTTTTCCAAAGGCAATATTTTGTTACTGGATTACATCGAATTTGTTTTCACTGACGTATGGAATGGCGCTTAAAGTTCCTGGTGTAAAGCAAACTTTAGGTATTCCTGATTTACCTCCTGCTCCAAAACCCACCGGTTCTGCGCAATCTTCCTTCTCCATATTATCAGCACTAAAGCAAGCTGCATCAACTGCAAATGGTCAAAGCTCATTGCCTGTTGAAACACCAAAAGAACCAAACAAAAAGATATCTTCTTCTTCTGCTGTTATTAGTCAGAGACTTAGAAGCTTAGAGAAACAAGTTAAAGGAAGAAAGAAAAACAAGAAGTGA	1296	0.412	MAYRRCLLQRGSNLIDRRFHPSFTYALHSDEVKREKPEEKPSLAGISNSFIQTRSFGSSFNGSMGFSSGFRHKEIYPFAGYNFCRSMSTMDQNPDKITVMTDVADVLTDTAVETVTSQAAPVVSEVAIAAADSYLPVQALQYFIDAVHSYTGLNWWAAIALTTLLIRTATVPLLINQLKTTSKLTLMRPHLEAIKEEMDGKTFDPEAVAEGQKRMKRLFKEYGVSPLSPLKGLFIQGPVFISFFLAINNMSEKMPSFKNGGAFWFTDLTTPDALYIFPVLAALSFLVVVECNMQEGMEGNPMGDTMKKFSRILAFLTVPFTMTFPKAIFCYWITSNLFSLTYGMALKVPGVKQTLGIPDLPPAPKPTGSAQSSFSILSALKQAASTANGQSSLPVETPKEPNKKISSSSAVISQRLRSLEKQVKGRKKNKK	431

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g00163	431	Pfam	60Kd inner membrane protein	155	341	IPR028055	-
	Vivi1g00163	431	CDD	5TM_Oxa1-like	152	349	-	-
	Vivi1g00163	431	NCBIfam	membrane protein insertase YidC	154	341	IPR028055	-
	Vivi1g00163	431	MobiDBLite	consensus disorder prediction	387	413	-	-
	Vivi1g00163	431	PANTHER	OXA1	106	421	IPR001708	GO:0016020\|GO:0032977

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g00163	Vivi-Chr1	3096939	3109597	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g00163	70	430	Chloroplast and Mitochondria Gene Families	AT2G28800	23.641	1.09e-10	61.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g00163	K03217		-	gmx:100817052	581.637