Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00145 ATGCAATCGTCTCGGGAAGGACCGAATTCAGCCGGTCTCAATTTCTATCACCAAACTGGTCAGGGAATTTACCTACAAGGCAATCTATGTGTTGATAGACATGGTAGCAGCAGCCAGGGAACTGGTTTTTCTTTCGAAACTAGCAAGGAGCAATGCTTCCCCCTAGAGTCATATCCAGAAATTGTTGCTTTCATGGATTGTGATTCCCCTTCCTATGCCAGTGTATCATCTAACAAGAGTCCATTTTCTCCGCAAGATTCTCAGTCTTGTTATTCAGATCACCACCAGTCTTCTGACAACACATATGGATCGCCGATAAGTGGGATGTCTAGTGTTGATGAAGGCAATGATTTGAAACACAAGCTTAGAGAACTGGAGAATTCGTTATTGGGGCCTGATGACTTGGATATAGTTGACAGTTACGGCAGCAGCATGGAGGCTAGTCTCCACGGCGGAGCATGTCCGTCACCTAAATATAATTGGGATCTGATTGCCGAAAATATTCCAAAGCTTGACTTGAAAGAAGTCCTCTTGCTATGTGCACAAGCTGTGTCTGATGGTGATATTTCAACAGCAAGAGGCTGGATGGATAATGTGTTGGTGAAGATGGTGTCGGTAGCCGGAGAACCAATCCAGAGGTTAAGTGCTTACTTATTGGAAGGGCTTAGAGCAAGGCTGGAATCGTCCGGAATCTTGATCTACAAGGCCTTGAAATGTGAACAACCAACAAGCAAAGAGCTAATGAGTTATATGCACACACTGTATCAGATTTGCCCATATTTTAAATTTGCATACGTATCAGCAAATGCTGTTATTCATGAAACAATGGCAAATGAATCCCGGATTCATATAATCGATTTCCAAATTGCACAGGGCACACAGTGGCACTTACTTATTCAAGCTCTTGCACACAGACCTGGCGGACCCCCTTTTATTCGAGTAACAGGTGTTGATGATTCCCAATCACTTCATGCTCGCGGTGGAGGACTTCAGATTGTAGGACAACGGCTTTCAGATTTTGCCAGATCTTGCGGAGTTCCGTTTGAGTTCCATACTGCTGCAATGTCTGGTTGCGAAGTTCAAAAGGAGAATCTTAGCATTAGGCCCGGGGAAGCCCTTGCTGTAAACTTCCCTTATATTTTGCACCATATGCCAGACGAGAGTGTGAGCATAGAGAATCATAGAGACAGATTGCTGAGATTGGTTAAAAGCTTGTCTCCAAAGGTTGTTACCCTCGTTGAGCAAGAATCCAACACCAATACTTCTCCTTTCTTTCATAGGTTTGTTGAGACAATGGATTATTACACAGCCATGTTTGAATCAATAGATGTTGCTTGCGCCAAAGATGATAAGAAGCGGATTAGTACAGAGCAGAACTGCGTTGCACGGGACATCGTCAACATGATAGCCTGCGAGGGGATTGAGAGGGTTGAGAGGCATGAACTTTTTGGAAAGTGGAGGATGAGATTTTCCATGGCTGGATTTAAACAATGCCAACTGAATTCTTCAGTGATGCATTCTGTCGAAAATATGTTGAAGGACTTCAATCAAAACTACAGACTGGAACATAGAGACGGCGCTCTTTATCTTAACTGGATGAAGAGAGCTATGGCCACTTCTTCTGCTTGGAGGTGA 1635 0.4385 MQSSREGPNSAGLNFYHQTGQGIYLQGNLCVDRHGSSSQGTGFSFETSKEQCFPLESYPEIVAFMDCDSPSYASVSSNKSPFSPQDSQSCYSDHHQSSDNTYGSPISGMSSVDEGNDLKHKLRELENSLLGPDDLDIVDSYGSSMEASLHGGACPSPKYNWDLIAENIPKLDLKEVLLLCAQAVSDGDISTARGWMDNVLVKMVSVAGEPIQRLSAYLLEGLRARLESSGILIYKALKCEQPTSKELMSYMHTLYQICPYFKFAYVSANAVIHETMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPFIRVTGVDDSQSLHARGGGLQIVGQRLSDFARSCGVPFEFHTAAMSGCEVQKENLSIRPGEALAVNFPYILHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVETMDYYTAMFESIDVACAKDDKKRISTEQNCVARDIVNMIACEGIERVERHELFGKWRMRFSMAGFKQCQLNSSVMHSVENMLKDFNQNYRLEHRDGALYLNWMKRAMATSSAWR 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00145 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 116 534 IPR005202 -
Vivi1g00145 544 MobiDBLite consensus disorder prediction 75 110 - -
Vivi1g00145 544 Pfam GRAS domain family 173 544 IPR005202 -
Vivi1g00145 544 ProSiteProfiles GRAS family profile. 164 544 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00145 Vivi-Chr1 2500349 2503255 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00145 1 544 GRAS Transcription Factor Family AT4G17230 58.425 0.0 618
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vivi1g00145 GRAS 2.5e-124 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00145 - - gmx:100776109 852.432