Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00131 ATGGGAAGTGATGAGACTCAACGGTTATTGCTTTCAGAGACAAGGGACCATTCTCATGTCAATGAGAAAAGTGACCTTCAGAGAAGACGACCGCGGCGTGGCAGCGCTTCAGACACAGAGATCAATCTGTTGCAACAACAGAATGCTATCCTCCAAACCCCTCAATCTATATATGAAACACAAGAAGCAGAACTCAATTTCAAGCCAGTACTCTTGTGTTTAGCAGCATACTTAGGTACAGGCACATTATGTTTCTTTCTCGCAAGTTACCATATTCAAGGCATAAAAACAAATGGATTCCTTGATGCTCTTTACTTCTGTGTCGTCACGATGACAACCGTTGGTTACGGCGATCTCGTTCCTAATAGCACTATAGCGAAACTACTTGCTTGCCTTTATGTTTTTACTGGTATGGCTCTTGGTGGCTTGATTCTCAGCAAAGCAGCAGATTACATTGTTGAAAAACAGGAAGTATATCTTGTTAAAGCGATATGCAACGCCGAGAAACTCGGTCTAGACGAGGTTTCTAAGGAGCTTGTGACTAAGAAAAGCAAATACAAGTTTTTGCTTTCAGTGTCCACTTTTATAGTACTCATGATTGCAGGAACTGTTTTTCTGTATTTTGTTGAGAAACTAGATTTCGTCGATGCATTCTATTGTGTTTGTTCGACGGTTACTACTTTAGGTTATGGCGATAAGAGCTTCTCAACTGCTATTGGTAGGACTTTTGCTGTGTTTTGGATATTGAGCAGCACCATTTGCTTGGCTCAGTGTTTTGCATATCTTGCTGATTTTTATACCGAAGATAGACAAAGATCGTTGGCGAAAATGGTCCTTACGCGAAAGTTTTCGCCCCGTGATCTTGAGGCAGCTGATCTTGACGGAGACAAAGCTGTCAGTGCTGCGGAGTTTGTTTTGTACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATGTTACAGATGTGATGGAGATTTTTAGAAAACTAGATTGTGATCAATCAGGAACTCTGACTGAAGCTGATTTCAGAAATTCTCAAGTCTGA 1047 0.4107 MGSDETQRLLLSETRDHSHVNEKSDLQRRRPRRGSASDTEINLLQQQNAILQTPQSIYETQEAELNFKPVLLCLAAYLGTGTLCFFLASYHIQGIKTNGFLDALYFCVVTMTTVGYGDLVPNSTIAKLLACLYVFTGMALGGLILSKAADYIVEKQEVYLVKAICNAEKLGLDEVSKELVTKKSKYKFLLSVSTFIVLMIAGTVFLYFVEKLDFVDAFYCVCSTVTTLGYGDKSFSTAIGRTFAVFWILSSTICLAQCFAYLADFYTEDRQRSLAKMVLTRKFSPRDLEAADLDGDKAVSAAEFVLYKLKEMGKINQEDVTDVMEIFRKLDCDQSGTLTEADFRNSQV 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00131 348 MobiDBLite consensus disorder prediction 1 37 - -
Vivi1g00131 348 SUPERFAMILY EF-hand 287 345 IPR011992 -
Vivi1g00131 348 Gene3D - 288 346 - -
Vivi1g00131 348 Pfam Ion channel 195 267 IPR013099 -
Vivi1g00131 348 Pfam Ion channel 77 153 IPR013099 -
Vivi1g00131 348 Gene3D - 169 272 - -
Vivi1g00131 348 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 98 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vivi1g00131 348 ProSiteProfiles EF-hand calcium-binding domain profile. 318 348 IPR002048 GO:0005509
Vivi1g00131 348 Gene3D - 64 158 - -
Vivi1g00131 348 ProSitePatterns EF-hand calcium-binding domain. 331 343 IPR018247 -
Vivi1g00131 348 PRINTS Two pore domain K+ channel signature 226 235 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vivi1g00131 348 PRINTS Two pore domain K+ channel signature 109 137 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vivi1g00131 348 SUPERFAMILY Voltage-gated potassium channels 68 154 - -
Vivi1g00131 348 MobiDBLite consensus disorder prediction 9 36 - -
Vivi1g00131 348 SUPERFAMILY Voltage-gated potassium channels 181 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00131 Vivi-Chr1 2230292 2232412 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00131 54 347 Ion Channels AT5G55630 56.122 8.90e-115 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00131 K05389 - gmx:100799492 493.812