Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00110 ATGGCAGAATCAGACGAAGAGTCAGGTGGTCAAGCATCAGGGAGCAAAGAACTTCAACAAGAAAGACTCCTTCCCATAGCAAACGTTGGAAGGATCATGAAGAAAGCTTTACCATCAAAAGCAAAGATATCAAAGGAATCAAAAGAAACCATGCAAGAGTGTGTATCAGAGTTCATAAGTTTCATCACAGGAGAAGCTTCTGAAAAGTGTCAGAAAGAGAAGAGGAAAACAATAAACGGTGATGATCTTGTTTGGGCCATGACTACACTTGGTTTTGAAGAATATGCTGAGCCTCTTAAGGTTTATCTTCATAAGTATAGGGAAATTGAAGGAGATAGGAATTTTTCTATGAATATGATTGGTGGGAAAGAGCAGCAGGGTAGTAATAATACTGATCATCGATTCTTTCAAGGGTGA 417 0.3885 MAESDEESGGQASGSKELQQERLLPIANVGRIMKKALPSKAKISKESKETMQECVSEFISFITGEASEKCQKEKRKTINGDDLVWAMTTLGFEEYAEPLKVYLHKYREIEGDRNFSMNMIGGKEQQGSNNTDHRFFQG 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00110 138 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Vivi1g00110 138 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Vivi1g00110 138 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Vivi1g00110 138 FunFam Nuclear transcription factor Y subunit B-3 11 136 - -
Vivi1g00110 138 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Vivi1g00110 138 SUPERFAMILY Histone-fold 20 117 IPR009072 GO:0046982
Vivi1g00110 138 MobiDBLite consensus disorder prediction 1 22 - -
Vivi1g00110 138 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 122 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vivi1g00110 138 Gene3D Histone, subunit A 11 135 IPR009072 GO:0046982
Vivi1g00110 138 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00110 Vivi-Chr1 1969912 1970749 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00110 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.841 5.75e-62 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi1g00110 CBFD_NFYB_HMF 3.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00110 K08065 - gmx:100778034 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00110 1 1969912 1970749 Vivi1g00110 1 1969912 1970749 ECH
Vivi1g00110 1 1969912 1970749 Vivi1g00110 1 1969912 1970749 PCT