Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00103 ATGTGGACACATGCCAACTATTCCATTGTCACTCTCTCTCTTCTCTCTATCCCTCTCTTCACATCACACACAGCAATGGACAGTGGAGGTGGTTTTCATGGCTACCGCAAGATCCCCAACACTACCTCTGGGACATTGAACACGAGGCAGCAAGTAGGAGGAGAACAGATCAACAACAGCAACCATTCAGAACAAGACAATGAATGCACTGTTAGGGAACAAGACCGTTTCATGCCAATTGCAAATGTGATAAGGATCATGCGTAAGATTCTTCCACCGCATGCGAAAATCTCCGACGATGCAAAGGAAACAATTCAAGAGTGTGTGTCTGAGTACATCAGTTTCATAACCGGTGAAGCAAATGAACGGTGTCAGAGAGAGCAAAGGAAGACGATAACTGCTGAAGATGTTCTCTGGGCTATGAGTAAGCTAGGGTTTGATGATTACATTGAACCGCTTACGATGTATCTTCATCGGTATCGCGAGCTTGAAGGCGACCGGACTACAGTGAGAGTTGAACCGTTGGGAAAGAGAACAATGGATCAATATGGAGGAGGGTTAGGTGGTTTTGTACCACAGTTTCATATTGGTCATCCAAATGGAGGGTATTATGGGAATGCACCAGCTTATATGATGAGGGATGGTGGTGGTAGTAACAATGCACCAAATGCTGCTGGAGGTTCTTCTTCTCATTCTCAAGGTGGACATGGAAATGCTGATGCCAATGGAAATCATCATAATCATCACCATCATCACCATCATCAATACAAATGA 774 0.4457 MWTHANYSIVTLSLLSIPLFTSHTAMDSGGGFHGYRKIPNTTSGTLNTRQQVGGEQINNSNHSEQDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTTVRVEPLGKRTMDQYGGGLGGFVPQFHIGHPNGGYYGNAPAYMMRDGGGSNNAPNAAGGSSSHSQGGHGNADANGNHHNHHHHHHHQYK 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00103 257 ProSitePatterns NF-YB/HAP3 subunit signature. 108 124 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vivi1g00103 257 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Vivi1g00103 257 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Vivi1g00103 257 PRINTS CCAAT-binding transcription factor subunit A signature 143 161 - -
Vivi1g00103 257 SUPERFAMILY Histone-fold 74 170 IPR009072 GO:0046982
Vivi1g00103 257 MobiDBLite consensus disorder prediction 218 257 - -
Vivi1g00103 257 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 77 141 IPR003958 -
Vivi1g00103 257 MobiDBLite consensus disorder prediction 221 240 - -
Vivi1g00103 257 Gene3D Histone, subunit A 63 182 IPR009072 GO:0046982
Vivi1g00103 257 FunFam Nuclear transcription factor Y subunit B-6 66 182 - -
Vivi1g00103 257 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 55 244 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00103 Vivi-Chr1 1832778 1835941 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00103 30 212 CCAAT-HAP3 Transcription Factor Family AT5G47670 59.242 1.78e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi1g00103 CBFD_NFYB_HMF 8.3e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00103 K08065 - gmx:100194424 269.24