Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00092 ATGTTCAACAACAACTACTCCACCACCGAGATAGAGGAGGAAGAAGACACCATCATCAACCACCACCAGTACCTTGACACAATCGACAATGAAATTGAAGAAGAACAAGAAGACTCCATTTATGTTGCAGTTGTGGGAGTAGGAATGATTGCTAGGAATCAAGTTAGTGCTGAGCAGGTAGAAATTTACATGGAGCAAGAAAGAAACAAGAGAAGACAACTCCTTCACAAGTTCATCCAATCTTGCTCTCTTTCCAAAGTTAAGGTTGATACCATCCTAATAGAAAGTGATTTCGTTGCAAAAGCCATCCTTGACCTAATTCCTATTCTTCAAATATCAAATTTAGTCATCGGCGCCAACAAGTTCCATCAAAGAAAAGCGAGATCAAAGAAAGGAAATGGCGTGGCTGATCAGGTGGTACAGAATGCACCAGAAAATTGTAAGGTTAGAATTATCTGTGAAGGTAAGGAAGTAAATGATGAGCAAATGATGATGAAGACACCTTCTCCTAAGATGATTGCCACTGCCAACTCTGCTAATAATGTGAACAACACAAAAGAAAATGATTCAGTTTTATGTGTTTGTTTCAAACCAAAGTTTAAATGA 606 0.3845 MFNNNYSTTEIEEEEDTIINHHQYLDTIDNEIEEEQEDSIYVAVVGVGMIARNQVSAEQVEIYMEQERNKRRQLLHKFIQSCSLSKVKVDTILIESDFVAKAILDLIPILQISNLVIGANKFHQRKARSKKGNGVADQVVQNAPENCKVRIICEGKEVNDEQMMMKTPSPKMIATANSANNVNNTKENDSVLCVCFKPKFK 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00092 201 Gene3D HUPs 6 164 IPR014729 -
Vivi1g00092 201 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 47 201 - -
Vivi1g00092 201 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 40 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00092 Vivi-Chr1 1762077 1763384 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00092 37 159 U-box Gene Family AT5G65500 32.283 1.76e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00092 - - cam:101493987 219.935