LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi1g00090	ATGTCTCGTGTGTGCTTACACTGTTACGTTGATGCATCCGATGAAGACAATACAAGTTGTGGTTGCGGTTTGATTGGTTTCAAGAAAAACCAAGTGTTTGACTTTGATTACAGTTTCAGTAGCGAAATAGAAGAAGAAGATGATTTGTTTGAGATAAATCTGAAGAAGGGAGAACCATTGGATTCAATAAAAGAAGAAGAAGATTATGAAAGAAGTACTGTGTTCTCTCTTGATATCCACAAAGATAAGTTATCTGATTCTGATGTTGTTTATGTGGCTGTTGGAGAAAATGGTTCAAGCATGGAAGCACTTTCGTGGACCTTAAAACACTTAGTCAAGCCTAATTCTACTATTGTTTCTCTTGTACATGTTTTCCCTAGAGTCAAACAAATTCCAACTCCAATGGGAAAAATTCCAAGGAGTCGTGTGAATCAAGAATATGTTAACATCTACATGACCCAAGAGAAAAGCAAGAGAAAATTACTCCTTCAAAAGTTCATTGACATGTGTACTGATTCAAAAGTTAAGGTGGAGATTTTGCTTATTGAGGGTGACAAAGTTGCTAAAGCCATTGTAGAGCTTGTTAAGAATTTAAATATATTGAAATTGGTGATTGGAACTACACAATCTTATCTAAGAAAACATGCGTCAAGAAGGCAAAATTCTACTGCGGAGATGGTGTTAAAAAGTGTAGAAGAAAATTGTGATGTTAAAATCATATGTGAAGGAAGAGAAGTGATTGATGAAATGATTAATGGGTGCAGTTCACAGCATGATGAAGTAGATGGTTTTGTTCCAGTCAAGCGTTTTGTTCCCAATGCGTTTGGGATATTTAGGTTCAGACATAGTTCATAA	855	0.3556	MSRVCLHCYVDASDEDNTSCGCGLIGFKKNQVFDFDYSFSSEIEEEDDLFEINLKKGEPLDSIKEEEDYERSTVFSLDIHKDKLSDSDVVYVAVGENGSSMEALSWTLKHLVKPNSTIVSLVHVFPRVKQIPTPMGKIPRSRVNQEYVNIYMTQEKSKRKLLLQKFIDMCTDSKVKVEILLIEGDKVAKAIVELVKNLNILKLVIGTTQSYLRKHASRRQNSTAEMVLKSVEENCDVKIICEGREVIDEMINGCSSQHDEVDGFVPVKRFVPNAFGIFRFRHSS	284

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi1g00090	284	Gene3D	HUPs	83	244	IPR014729	-
	Vivi1g00090	284	PANTHER	U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE	37	256	-	-
	Vivi1g00090	284	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	92	237	-	-
	Vivi1g00090	284	Pfam	Universal stress protein family	90	231	IPR006016	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi1g00090	Vivi-Chr1	1738495	1739979	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi1g00090	87	216	U-box Gene Family	AT4G25160	31.061	2.29e-13	68.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi1g00090	-		-	tpra:123908796	362.844