Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00081 ATGAAACGATCCATCGACGATTCAACGGCCCCGATTGCGAAACCAGTTTTCCTCACCAAAGCCCAGCGTGAACAGCAAGCACTTGAACGCCGCCACCTTCAAGTCACCGGTCATCGGCGCAATCAGGAAGACCTTCTCCTTTCAGGCAATAACCGTCCTTCCGATCCAAAGCCCTCCGATTCCGATCGACGAGATCGCGATTCAGATCGCCGAGACAGAGACAGAGATAGAGATAGGGACAGTTATAGAGACAGAGAAAGGGATAGAGATAGAGATAGAGAACGTGATCGAGAAAGGGAACGGGAGAGGGATAGGGATAGAGATAACAGAGATCGGGAGCGGCGAAACCGTGATAAGGAACGTGAAGAAGAAAGTAAGGCTCGTGAGCGTGCGCGATTAGAGAAGCTAGCGGAACGAGAGAAAGAGAAAGAGCTTGAATCGATTAAGGAACAATACCTAGGTTCGAAAAAACCTAAAAAGAGGGTTATTAAACCTAGCGAGAAATTTCGGTTTTCGTTTGATTGGGAAAATACTGAGGATACTTCGCGTGATATGAATTATCTTTACCAAAACCCTCATGAGGCTCAGCTTTTGTTCGGTCGAGGGTTTCGTGCTGGGATGGATCGGCGCGAGCAGAAGAAGCTTGCTGCTAAGAATGAGAAGGAGATGAGGGATCAAATCAGGAAGAAGGATGGGATTGAGGAGAAGCCGGAGGAGGCTGATGCGCAGAGGCGTAAGGAGGAGGCTGCTGATATGTATGACACGTTTGATATGAGGGTTGATCGACATTGGAGTGAGAAGAAGCTTGAAGAGATGACGGAGAGAGATTGGCGTATTTTTAGGGAGGATTATAATATATCTTACAAAGGTTCTAAGATTCCTCGGCCTATGAGGAGTTGGGTTGAGAGCAAGTTGAGTCAAGAGCTTTTGAAGGCGGTGGAGAAAGCTGGTTACAAGACCCCTTCTCCGATTCAGATGGCTGCTATTCCCCTTGGTCTTCAGCAGCGTGATGTTATCGGTGTGGCTGAGACAGGTTCGGGGAAGACTGCTGCATTTGTTCTTCCTATGTTGAGTTATATCACAAGGCTTCCTCCTATTAGCGAGGAGAATGAGGCTGAGGGTCCTTACGCTGTTGTTATGGCGCCAACTCGTGAGCTTGCTCAGCAGATTGAGGATGAGACTGTTAAATTTGCTCAGTATATGGGAATTAAAGTTGTTTCTATTGTTGGTGGTCAGTCCATTGAGGAGCAAGGGTTTAAGATAAGGCAGGGTTGTGAAATTGTGATTGCTACCCCTGGTCGTTTGATTGATTGCTTGGAGCGTCGCTATGCGGTTCTCAACCAGTGTAATTATGTTGTTCTTGATGAGGCTGATCGCATGATTGATATGGGGTTTGAGCCACAGGTCATGGGTGTGCTTGATGCTATGCCTTCTAGTAATTTGAAACCTGAGAATGAAGATGAAGAGCTCGATGAGAAGAGGATTTATAGGACCACTTATATGTTTAGTGCCACTATGCCTCCTGCTGTGGAGAGGCTTGCTAGGAAGTATTTGAGGAACCCTGTTGTGGTGACTATAGGCACTGCTGGAAAAGCAACTGACTTGATCAGCCAGCATGTGATCATGATGAAGGAATCTGAGAAATTTTATAAGCTTCAGAGATTGTTGGATGAGCTTAATGATAAAACTGCAATTGTGTTTGTCAACACCAAGAAGAGTGCCGATTTTCTTGCTAAGAATTTGGATAAGGAAGGCTATCGTGTGACTACCTTGCACGGAGGGAAATCACAGGAACAAAGAGAGATTAGTCTTGAAGGATTTAGGACCAAGAGATATAATGTGCTTGTTGCAACCGATGTTGCTGGACGTGGTATTGACATACCTGATGTGGCTCATGTTATCAACTATGATATGCCTGGGAATATTGAAATGTATACCCATCGTATAGGACGTACAGGTCGTGCAGGAAAGACTGGTGTGGCTACAACATTCTTGACTCTCCAGGACACTGATGTCTTCTATGACCTTAAGCAGATGCTCATTCAGAGTAATAGTGCAGTCCCACCTGAATTGGCAAGGCATGAAGCTTCCAAATTCAAGCCGGGATCTATTCCTGACAGACCACCTAGGCGAAATGACACTGTTTTTGCCCATTAG 2157 0.459 MKRSIDDSTAPIAKPVFLTKAQREQQALERRHLQVTGHRRNQEDLLLSGNNRPSDPKPSDSDRRDRDSDRRDRDRDRDRDSYRDRERDRDRDRERDRERERERDRDRDNRDRERRNRDKEREEESKARERARLEKLAEREKEKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNYLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMRDQIRKKDGIEEKPEEADAQRRKEEAADMYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWVESKLSQELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYMGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKRIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKSADFLAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDTDVFYDLKQMLIQSNSAVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00081 718 FunFam probable ATP-dependent RNA helicase DDX23 259 528 - -
Vivi1g00081 718 CDD SF2_C_DEAD 536 665 - -
Vivi1g00081 718 SMART ultradead3 317 539 IPR014001 -
Vivi1g00081 718 MobiDBLite consensus disorder prediction 41 55 - -
Vivi1g00081 718 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 551 695 IPR001650 -
Vivi1g00081 718 MobiDBLite consensus disorder prediction 24 39 - -
Vivi1g00081 718 CDD DEADc_DDX23 309 525 - -
Vivi1g00081 718 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 453 461 IPR000629 -
Vivi1g00081 718 Pfam Helicase conserved C-terminal domain 550 656 IPR001650 -
Vivi1g00081 718 MobiDBLite consensus disorder prediction 690 718 - -
Vivi1g00081 718 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 329 524 IPR014001 -
Vivi1g00081 718 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 298 326 IPR014014 GO:0003724
Vivi1g00081 718 Coils Coil 216 236 - -
Vivi1g00081 718 MobiDBLite consensus disorder prediction 214 247 - -
Vivi1g00081 718 MobiDBLite consensus disorder prediction 23 161 - -
Vivi1g00081 718 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 235 695 - -
Vivi1g00081 718 Gene3D - 259 528 IPR027417 -
Vivi1g00081 718 SMART helicmild6 575 656 IPR001650 -
Vivi1g00081 718 MobiDBLite consensus disorder prediction 56 157 - -
Vivi1g00081 718 Gene3D - 529 716 IPR027417 -
Vivi1g00081 718 Pfam DEAD/DEAH box helicase 323 513 IPR011545 GO:0003676|GO:0005524
Vivi1g00081 718 MobiDBLite consensus disorder prediction 693 718 - -
Vivi1g00081 718 FunFam probable ATP-dependent RNA helicase DDX23 529 717 - -
Vivi1g00081 718 Coils Coil 103 146 - -
Vivi1g00081 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 374 677 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00081 Vivi-Chr1 1545007 1548137 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00081 296 678 Eukaryotic Initiation Factors Gene Family AT3G19760 31.771 8.26e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00081 K12858 - gmx:100792810 1146.72