Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00048 ATGGCAATAGCAGGAGGAGCAGCAACATCATCACCAACCATAACCATGAGCTTGAGCAACACCAATAGTCACGAAGATGGAACTTCTAATTCCAACGATAACAATATAATTACAAAACCTACACCAACATCAGCAACAGCTATAGTTGATGATGATCACGAGCATGACATGGTCATGCCAGGCTTTCGTTTCCATCCTACTGAAGAAGAACTCGTTGAATTCTACCTTCGCCGTAAGGTTGAGGGAAAACGTTTCAACGTTGAGCTTATCACTTTTCTCGATCTTTATCGCTATGACCCTTGGGAACTTCCTGCTTTGGCGGCGATTGGAGAGAAGGAGTGGTACTTTTATGTGCCTCGAGATCGAAAGTATAGAAACGGTGATCGGCCTAATCGTGTAACAACTTCCGGTTATTGGAAAGCTACCGGAGCTGATAGGATGATTCGAACTGAAAATTTCCGTTCAATTGGACTGAAGAAAACCCTAGTTTTTTATTCTGGTAAAGCTCCTAAAGGTATAAGAACTAGTTGGATTATGAACGAGTATCGCTTACCACAACACGAAACCGAACGATATCAAAAGGGTGAGATATCGTTATGCCGTGTGTACAAGAGAGCTGGAGTTGAAGATCATCCTTCTCTTCCTCGATGTCTTCCGATCACGAGACCTTCCTCGATTCCGTCGTCGTCGAGAAACTCCGAGAAGAATAAACAGAATGAAACATTGGGAATAGGATTTGTTGTTGGACAATCAGCAAAGATAATTGATAATAATCATCAAATAGTTAACAAAATGGATGCAAACAACAATAGCAGTGGTGGTGATTGTAGTTCAGATCAAGTCACAACAGCTCTTGGTTTATCCAAATACAACAACAATACTAATCCAATTTACAGTCCAGAAGAAGAGGAACAATTGATGATGATGCAACAACAGCAGCAACAACAACAGCAACAACCTAGGCAATTAGTACAATATGCAGGAGGAAACTCATTGTTAGTTTCTGCCTGTGGTGGCGGTGGTTCTATTTTCCCTGTCTCGGCTACATCGGCGAGCTGTTCTAACAACGGTTCGAGTTCGACAAGTGCTGCAATGATGATGGATGATCTTAACAGGCTTGTGAGTTATCAGCAACAGCAATACTGTTACAATGTTCAAAGCCATTCCAATCCAAATCCTAATCATTTGTCTAATTTGCTTATGCAACCAATGTCTCTACCAAATCAACTACCAACGACATTCCCTGACAGACTGTGGGACTGGAATCCAATTCCTGAAGATCATAATCATAATCATCCCAACAGTAACACCAGCAACTTCAAGTTGTTTTTCTAA 1335 0.4135 MAIAGGAATSSPTITMSLSNTNSHEDGTSNSNDNNIITKPTPTSATAIVDDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKGEISLCRVYKRAGVEDHPSLPRCLPITRPSSIPSSSRNSEKNKQNETLGIGFVVGQSAKIIDNNHQIVNKMDANNNSSGGDCSSDQVTTALGLSKYNNNTNPIYSPEEEEQLMMMQQQQQQQQQQPRQLVQYAGGNSLLVSACGGGGSIFPVSATSASCSNNGSSSTSAAMMMDDLNRLVSYQQQQYCYNVQSHSNPNPNHLSNLLMQPMSLPNQLPTTFPDRLWDWNPIPEDHNHNHPNSNTSNFKLFF 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00048 444 ProSiteProfiles NAC domain profile. 58 205 IPR003441 GO:0003677|GO:0006355
Vivi1g00048 444 FunFam NAC domain-containing protein 35 67 208 - -
Vivi1g00048 444 SUPERFAMILY NAC domain 58 204 IPR036093 GO:0003677|GO:0006355
Vivi1g00048 444 Gene3D NAC domain 67 208 IPR036093 GO:0003677|GO:0006355
Vivi1g00048 444 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 55 318 - -
Vivi1g00048 444 MobiDBLite consensus disorder prediction 222 238 - -
Vivi1g00048 444 MobiDBLite consensus disorder prediction 1 43 - -
Vivi1g00048 444 MobiDBLite consensus disorder prediction 214 238 - -
Vivi1g00048 444 MobiDBLite consensus disorder prediction 8 43 - -
Vivi1g00048 444 Pfam No apical meristem (NAM) protein 60 184 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00048 Vivi-Chr1 1080222 1082803 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00048 57 218 NAC Transcription Factor Family AT2G02450 91.975 1.13e-111 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1g00048 NAM 4.9e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00048 - - tpra:123910806 588.956