Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00045 ATGAATGATCCAAGTAATCTTCATTTGAAGAAGGAGCTTACTCAAATTCGAAAAGCTGCTCGTGTTTTGAGGGATCCAGGTACCACTTCTTCATGGAAATCTACTTCGAGATCTGTTCCTGTTGCTGCTGTTTCTGCTACGACTCCATTGAGGAAGAATCTCAATTCATCTCATGCTTCTGGTAATGGTAACAAGAGTGTTTTCTTGTATAACTGGAATAACTCTAAATCTGTCAAAGACGAAGAACAAGAACAACAACGCATTGAAGAAGATGAAGATGAAGAAGATGAAGATGGAGATGGTTCTTCCTCTTTACTTGGAAGTTTGAGCGATGCACGCAACGGTTGTGATGATTCAAAGAGTGACGGTGGGACCCGCAGTTCGTTTCTCCGAAATCCGAATGCTAGAAGAGCGGTTCCTCTTCATGTTAATAAGAAGAAAAAGAGTAAGAAAAATCGTTATGCTTTGTCGCCGTTGGTTAATAATGATGATTCTGATGATTATTGTAACTCCTTTTCTGGTGCTTCTTCGCTTCTTCTTAAGCTTAAGAGTAAGAATAAGTTTGTTAGAAGGACTAGTTTGAAAGAGGATGATTCTTATTCCTATAGTACCCCTGCATTGTCGACTAGCTCTTTTAATAGGTATCTTCGTCGTTATCCTAGTACTGTTGGATCGTATACGACTTCTATGAATGATGGGGATGATGAAATTGATGAGGGTTTGGATCTGCCGGGGAGTCGGGGGTGTGGGATTCCTTGTTATTGGTCGAAGAGGACGCCGAAGCATAGAGGGGGATGTGGGAGTTGTTGTTCTCCTTCGTTTTCGGATACTTTGAGGAGGAAGGGTAGTAGTATGTTGTGTGGAAGTCAGTCTATGTATTCGAGACACCGAAGATCGTCTTCTTCAACTTCGCTGACGCAGAAGAGGAGAATGTATTTGAAGAATGGTCGTGGAGGAGGAGGAGGAGGAGGAGGTGTTATTCCTTTGCTTAATAGTACTAGCAGTGGTGATGTGAGACAATGTTCGTCGTCAATTGGTATTGGTAGGAGTAGGACAGATGATGAACTTTCTAGTAACTTTGGGGAGCTTGATCTTGAGGGATTGAGTAGACTTGATGGAAGAAGGTGGTCATCAAGTTGTAGGAGTCAAGAGGGTCTGGAGATTGTTCCTCTCAATGGAGGTGATGAAGAAGGCTCCTCGGAAAGTGGTAGAAGTTTCAGCCATAAGTATAAACCTTTGTTCTTTGGTGAACTCATTGGGCAGAATATTGTGGTTCACTCACTCATCAATGCTGTTTCAAGAGGCAGAATTGCTCCTGTCTATCTTTTTCAGGGTCCGCGTGGGACTGGCAAAACATCTACTGCTAGGATTTTTGCCACTGCCTTGAATTGTGCGGCTTCTGATGAAGGTAAGCCTTGTGGTTACTGCAGGGAATGTGCTGATTTTATTTCTGGTAAGAGCAGTGATCTGGTGGAGGTCGATGCGTCTAATAAGAAAGGAATTGATAGAGCTAGGTATCTGCTGAAAAGATTGTCGGTTGGGTCTTCTTCGGCGGCCTCCTCACGATATACGGTTTTTGTTATTGATGAATGTCACTTGTTAACCTCCAAGACATGGCTTGGATTTCTCAAGTTTCTCGAAGAACCGCCTCAGCATGTTGTGTTCATACTTATAACATCAGATATTGACAATGTGCCAAGAACAATACAGTCTCGATGTCAGAAGTATCTTTTCAATAAAATTAAAGATGGGGATATTGTGACAAGGTTAAGGAAAATATCTACTCAGGAGAACCTAGAAGTCGACACAGATGCCTTGGATCTTATTGCCATGAATGCAGACGGTTCACTTCGTGATGCAGAGACAATGTTAGAACAGCTTAGTTTGCTGGGAAAAAGAATCACTACTTCTCTTGTCAACGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAATTAGCAATGTCAGCAGACACTGCAGAGACGGTGAAAAGATCCAGAGAATTGATGGACTCCGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGCCTTATTATGGACATCATTGCTGGATCATACGCGGTCGTTGACACCAAACCCGACGGTTCATTCTTCGGTGGTCGGAGTTTGAATGAAGTGGAGTTGGAGAGACTAAAAAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTGAGGACTTCTAGTGAACGCTCAACTTGGTTTACAGCAACTCTTTTACAACTTGGTTCCGTACCTTCTTCGGATGTTACTCAGTCTAGCAGCAGCAGGAGGCAGAGCTACAAGACAACGGAAGATGAACCGTCAAGTGCTTCAAGGGACGTTACTTCTTTCAAGCACAAGTCAGGCCTCCAATATATGTCTCAAAAATCAACTCCCACTGCTTCCCACCAAAAAGCAGTAAATGGCAGTTCCGGCCTTCAAAATGGCTTGAAATCAAAGCCATCAAATAGCCCGGTTATAAATGATGGCTCCACAGTGGTCTCGTCAGACGATCTTATAGTTGGGAATACAATGTTTAGATGCATAGATTCAGAAAAGTTATGTGACATATGGGCATGTTGTATTGAGAGGTGCCACTCTAAGACATTAAGACAGCTGCTACAAGATTATGGAAAGCTTGTGTCCATATCTGAAGTTCAAGGTGTTCTTGTAGCATATGTTGCATTTGGGGATGAAGATATTAAACTCAGGGTTGAAAGGTTTTTAAGCAGCATTACAAACTCCCTGGAGATTGTTCTTAGACGCATTGTGGAGGTCAGAATTATCCTCTTGCCAGATGGTGAAGGTGAAAATCAGGTTAATTTGCCGCCAGGTCTAAAGCAAGCTGCGTCATTACTGGCAAGTGAGGACGAACAAAGGCGAGGCCATATGAATGGAACCGTGTCATATTCAAGTTTGCATCAATCTGCCCTAGGTTCATCAGATATTTTGACCGAAGGAAATGGCGTGAAGGAAAGAAGACGGGATAATCCAGTGCAGAGAATTGAATCCATCATCCGTGAGCAGAGGTTGGAAACTGCCTGGTTGCAGGCTGTAGAAAAAGGTTCCCCTGGATCATTGAGTCGCTTGAGACCTGAGAAGAATCAAGTCCTGCCTCAGGATGGTGCTTATTGTGTAAGCTCAATGGAGTCCATGGATTCATTAAGATTTTCCTCTCAACAGCATAGAGAAGATGGCACAAATAGTGATCTTAAAATTTTGGGCCTTAAAAATGGAAGGGTCCTACCGAAGGATCAGATAGGTAAAAGGTCCGACAGTCATCCGATGTCCCCAAGTATATTGCATAACAGCAGTTTAGCAACAATGTCTGTAAAAGATAACCCGGGTTATGAATCGGGTTCAGGAGGTAGAGGTTGTGGATTTTTATGTTGGAATAGAAAGTCCAACAATAAAAGGACAGGGAAGATAAAGGGCACCCCAGTTGGAGGATCGCGTAAAGTCGGGCGTTCTTCAGTGTTAGGTGACTATGGTAAGCGGAAGAAAAACGAGCGGAAAAGATAA 3543 0.429 MNDPSNLHLKKELTQIRKAARVLRDPGTTSSWKSTSRSVPVAAVSATTPLRKNLNSSHASGNGNKSVFLYNWNNSKSVKDEEQEQQRIEEDEDEEDEDGDGSSSLLGSLSDARNGCDDSKSDGGTRSSFLRNPNARRAVPLHVNKKKKSKKNRYALSPLVNNDDSDDYCNSFSGASSLLLKLKSKNKFVRRTSLKEDDSYSYSTPALSTSSFNRYLRRYPSTVGSYTTSMNDGDDEIDEGLDLPGSRGCGIPCYWSKRTPKHRGGCGSCCSPSFSDTLRRKGSSMLCGSQSMYSRHRRSSSSTSLTQKRRMYLKNGRGGGGGGGGVIPLLNSTSSGDVRQCSSSIGIGRSRTDDELSSNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVPLNGGDEEGSSESGRSFSHKYKPLFFGELIGQNIVVHSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFATALNCAASDEGKPCGYCRECADFISGKSSDLVEVDASNKKGIDRARYLLKRLSVGSSSAASSRYTVFVIDECHLLTSKTWLGFLKFLEEPPQHVVFILITSDIDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLEVDTDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSADTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKPDGSFFGGRSLNEVELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSVPSSDVTQSSSSRRQSYKTTEDEPSSASRDVTSFKHKSGLQYMSQKSTPTASHQKAVNGSSGLQNGLKSKPSNSPVINDGSTVVSSDDLIVGNTMFRCIDSEKLCDIWACCIERCHSKTLRQLLQDYGKLVSISEVQGVLVAYVAFGDEDIKLRVERFLSSITNSLEIVLRRIVEVRIILLPDGEGENQVNLPPGLKQAASLLASEDEQRRGHMNGTVSYSSLHQSALGSSDILTEGNGVKERRRDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGAYCVSSMESMDSLRFSSQQHREDGTNSDLKILGLKNGRVLPKDQIGKRSDSHPMSPSILHNSSLATMSVKDNPGYESGSGGRGCGFLCWNRKSNNKRTGKIKGTPVGGSRKVGRSSVLGDYGKRKKNERKR 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00045 1180 MobiDBLite consensus disorder prediction 85 101 - -
Vivi1g00045 1180 MobiDBLite consensus disorder prediction 773 787 - -
Vivi1g00045 1180 MobiDBLite consensus disorder prediction 20 43 - -
Vivi1g00045 1180 FunFam DNA polymerase III subunit gamma/tau 401 580 - -
Vivi1g00045 1180 FunFam DNA polymerase III subunit gamma/tau 582 644 - -
Vivi1g00045 1180 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 429 628 IPR027417 -
Vivi1g00045 1180 CDD AAA 419 578 - -
Vivi1g00045 1180 MobiDBLite consensus disorder prediction 1146 1180 - -
Vivi1g00045 1180 SUPERFAMILY post-AAA+ oligomerization domain-like 652 753 IPR008921 GO:0003677|GO:0006260
Vivi1g00045 1180 CDD HLD_clamp_pol_III_gamma_tau 581 644 IPR045085 -
Vivi1g00045 1180 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 408 819 - -
Vivi1g00045 1180 NCBIfam DNA polymerase III subunit gamma/tau 405 755 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vivi1g00045 1180 SMART AAA_5 437 588 IPR003593 GO:0016887
Vivi1g00045 1180 MobiDBLite consensus disorder prediction 27 43 - -
Vivi1g00045 1180 Pfam DNA polymerase III, delta subunit 420 581 - -
Vivi1g00045 1180 Coils Coil 78 98 - -
Vivi1g00045 1180 Coils Coil 717 744 - -
Vivi1g00045 1180 Gene3D - 396 579 IPR027417 -
Vivi1g00045 1180 Pfam DNA polymerase III subunits gamma and tau domain III 635 755 IPR022754 GO:0003887
Vivi1g00045 1180 MobiDBLite consensus disorder prediction 759 836 - -
Vivi1g00045 1180 MobiDBLite consensus disorder prediction 788 836 - -
Vivi1g00045 1180 MobiDBLite consensus disorder prediction 75 157 - -
Vivi1g00045 1180 Gene3D - 583 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00045 Vivi-Chr1 998864 1004299 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00045 409 625 Core DNA Replication Machinery Family AT1G63160 24.885 5.86e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00045 - - gmx:100814391 1469.91