Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00037 ATGAATGATCCAAGTAATCTTCATTTGAAGAAGGAGCTTACTCAAATTCGAAAAGCTGCTCGTGTTTTGAGGGATCCAGGTACTACTTCTTCATGGAAATCTACTTCGAGATCTGTTCCTGCTGCTGCTGTTTCTGCTACGACTCCATTGAGGAAGAATCTCAATTCATCTCATGCTTCTGGTAATGGTAACAAGAGTGTTTTCTTGTATAACTGGAATAACTCTAAATCTGTCAAAGACGATGAACAAGAACAACAACGCATTGAAGAAGATGAAGATGAAGATGGAGATGGTTCTTCCTCTTTACTTGGAAGTTTGAGCGATGCGCGCAACGGTTGTGATGATTCAAAGAGTGACGGTGGGACCCGCAGTTCGTTTCTCCGAAATCCGAATGCTAGAAGAGCGGTTCCTCTTCATGTTAATAAGAAGAAAAAGAGTAAGAAAAATCGTTATGCTTTGTCGCCGTTGGTTAATAATGATGATTCTGATGATTATTGTAACTCGTTTTCTGGTGCTTCTTCGCTTCTTCTTAGGCTTAAGAGTAAGAATAAGTTTGTTAGAAGGACTAGTTTGAAAGAGGATGATTCTTATTCCTATAGTACCCCTGCATTGTCTACTAGCTCTTTTAATAGGTATCTTCGTCGTTATCCTAGTACTGTTGGATCGTATACGACTTCTATGAATGATGGGGATGATGAAATTGATGAGGGTTTGGATCTGCCGGGGAGTCGGGGGTGTGGGATTCCGTGTTATTGGTCGAAGAGGACGCCGAAGCATAGAGGGGGATGTGGGAGTTGTTGTTCTCCTTTGTTTTCGGATACTTTGAGGAGGAAGGGTAGTAGTATGTTGTGTGGAAGTCAGTCTATGTATTCGAGACACCGAAGATCGTCTTCTTCAACTTCGCTGACGCAGAAGAGGAGAATGTATTTGAGGAATGGTCGTGGTGGAGGAGGAGGAGGAGTTATTCCTTTGCTTAATAGCACTAGTAGTGGTGATGTGAGACAGTGTTCGTCGTCTATTGGTATTGGTAGGAGTAGGACGGATGATGAACTTTCTAGTAACTTTGGGGAGCTTGATCTTGAGGGATTGAGTAGACTTGATGGAAGAAGGTGGTCATCGAGTTGTAGGAGTCAAGAGGGTCTGGAGATTGTTCCTCTCAATGGAGGTGATGAAGAAGGCTCCTCCGAAAACGGTAGAAGTTTCAGCCACAAGTATAAGCCTTTGTTCTTTGGTGAACTCATTGGGCAGAATATTGTGGTTCACTCACTCATCAATGCTGTTTCAAGAGGCAGAATTGCTCCTGTCTATCTTTTTCAGGGTCCACGTGGGACTGGCAAAACATCTACTGCTAGGATATTTGCCACCGCCTTGAATTGTGCGGCTTCTGATGAAGGTAAGCCTTGTGGTTACTGCAGGGAATGTGCTGATTTTATTTCTGGTAAGAGCAGTGATCTGGTGGAGGTCGATGCGTCTAATAAGAAAGGAATTGATAGAGCTAGGTATCTTCTGAAAAGATTGTCGGTTGGGTCTTCTTCGGCGGCCTCCTCGCGATATACGGTTTTTGTTATTGATGAATGTCACTTGTTAACCTCCAAGACATGGCTTGGATTTCTCAAGTTTCTTGAAGAACCGCCTCAGCATGTTGTGTTCATACTTATAACATCAGATATTGACAATGTGCCAAGAACAATACAGTCTCGATGTCAGAAGTATCTTTTCAATAAAGTTAAAGATGGGGATATTGTGACAAGGTTAAGGAAAATATCTACTCAGGAGAACCTCGAAGTCGACACAGATGCCTTGGATCTTATTGCCATGAATGCAGACGGTTCACTTCGAGATGCAGAGACAATGTTAGAACAGCTTAGTTTGCTGGGAAAAAGAATCACTACTTCTCTTGTCAACGAACTTGTGGGAGTTGTTTCAGATGAAAAATTATTGGAACTTTTGGAATTAGCAATGTCAGCAGACACTGCAGAGACGGTGAAAAGATCCAGAGAATTGATGGACTCCGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCTGGCCTTATTATGGACATCATTGCTGGATCATACGCGGTCGTTGACACCAAACCCGACGGTTCATTCTTTGGTGGTCGGAGTTTGAATGAAGTGGAGTTGGAGAGACTAAAAAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTGAGGACTTCTAGTGAACGCTCAACTTGGTTTACAGCAACTCTTTTACAACTTGGTTCCGTACCTTCTTCGGATGTTACTCAGTCTAGCAGCAGCAGGAGGCAGAGCTACAAGACAACGGAAGATGAACCGTCAAGTGCTTCAAGGGACGTTACTTCTTTCAAGCACAAGTCAGGCCTCCAATATATGTCTCAAAAATCAACTCCCACTGCTTCCCACCAAAAAGCATTAAATGGCAGTTCCGGCCTTCAAAATGGCTTGAAATCAAAACCATCAAATAGCCCGGTTATAAATGATGGCTCCACAGTGGTCTCGTCTGATGATCTTATAGTTGGGAATACAATGTTTAGATGCATAGATTCAGAGAAGTTATGCGACATATGGGCATGTTGTATTGAGAGGTGCCACTCTAAGACATTAAGACAGCTGCTACAAGATTATGGAAAGCTTGTGTCCATATCCGAAGTTCAAGGTGTTCTTGTAGCATATGTTGCATTTGGGGATGAAGATATTAAACTCAGGGTTGAAAGGTTTTTAAGCAGCATTACAAACTCCTTGGAGATTGTTCTTAGACGCATTGTGGAGGTCAGAATTATCCTCTTGCCAGATGGTGAAGGTGAAAATCAGGTTAATTTGCCGCCAGGTCTAAAGCAAGCTGCGTCATTACTGGCAAGTGAGGACGAACAAAGGCGAGGCCATATGAATGGAACTGTGTCATATTCAAGTTTGCATCAATCTGCCCTAGGTTCATCAGATATTTTGACCGAAGGAAATGGCGTGAAGGAAAGAAGACGGGATAATCCAGTGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGTTGGAAACTGCCTGGTTGCAGGCTGTAGAAAAAGGTTCCCCTGGATCATTGAGTCGCTTGAGACCTGAGAAGAATCAAGTCCTGCCTCAGGATGGTGCTTATTGTGTAAGCTCAATGGAGTCCATGGATTCATTAAGATTTTCCTCTCAACAGCATAGAGAAGATGGCGCAAATAGTGATCTTAAAATTTTGGGCCTTAAAAATGGAAGGGTCCTACCGAAGGATCAGATAGGTAAAAGGTCCGACAGTCACCCGATGTCCCCAAGTATATTGCATAACAGCAGTTTAGCAACAATGTCTGTAAAAGATAACCCGGGTTATGAATCGGGTTCGGGAGGTAGAGGTTGTGGATTTTTATGTTGGAATAGAAAGTCCAACAATAAAAGGACAGGGAAGATAAAGGGCACCCCAGTTGGAGGATCGCGTAAAGTCGGGCGTTCTTCAGTGTTAGGTGACTATGGTAAGCGGAAGAAAAATGAGCGGAAAAGATAA 3528 0.4306 MNDPSNLHLKKELTQIRKAARVLRDPGTTSSWKSTSRSVPAAAVSATTPLRKNLNSSHASGNGNKSVFLYNWNNSKSVKDDEQEQQRIEEDEDEDGDGSSSLLGSLSDARNGCDDSKSDGGTRSSFLRNPNARRAVPLHVNKKKKSKKNRYALSPLVNNDDSDDYCNSFSGASSLLLRLKSKNKFVRRTSLKEDDSYSYSTPALSTSSFNRYLRRYPSTVGSYTTSMNDGDDEIDEGLDLPGSRGCGIPCYWSKRTPKHRGGCGSCCSPLFSDTLRRKGSSMLCGSQSMYSRHRRSSSSTSLTQKRRMYLRNGRGGGGGGVIPLLNSTSSGDVRQCSSSIGIGRSRTDDELSSNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVPLNGGDEEGSSENGRSFSHKYKPLFFGELIGQNIVVHSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFATALNCAASDEGKPCGYCRECADFISGKSSDLVEVDASNKKGIDRARYLLKRLSVGSSSAASSRYTVFVIDECHLLTSKTWLGFLKFLEEPPQHVVFILITSDIDNVPRTIQSRCQKYLFNKVKDGDIVTRLRKISTQENLEVDTDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSADTAETVKRSRELMDSGVDPMVLMSQLAGLIMDIIAGSYAVVDTKPDGSFFGGRSLNEVELERLKNALKLLSEAEKQLRTSSERSTWFTATLLQLGSVPSSDVTQSSSSRRQSYKTTEDEPSSASRDVTSFKHKSGLQYMSQKSTPTASHQKALNGSSGLQNGLKSKPSNSPVINDGSTVVSSDDLIVGNTMFRCIDSEKLCDIWACCIERCHSKTLRQLLQDYGKLVSISEVQGVLVAYVAFGDEDIKLRVERFLSSITNSLEIVLRRIVEVRIILLPDGEGENQVNLPPGLKQAASLLASEDEQRRGHMNGTVSYSSLHQSALGSSDILTEGNGVKERRRDNPVQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGAYCVSSMESMDSLRFSSQQHREDGANSDLKILGLKNGRVLPKDQIGKRSDSHPMSPSILHNSSLATMSVKDNPGYESGSGGRGCGFLCWNRKSNNKRTGKIKGTPVGGSRKVGRSSVLGDYGKRKKNERKR 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00037 1175 Coils Coil 712 739 - -
Vivi1g00037 1175 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 403 815 - -
Vivi1g00037 1175 MobiDBLite consensus disorder prediction 20 45 - -
Vivi1g00037 1175 MobiDBLite consensus disorder prediction 1141 1175 - -
Vivi1g00037 1175 SUPERFAMILY post-AAA+ oligomerization domain-like 647 748 IPR008921 GO:0003677|GO:0006260
Vivi1g00037 1175 SMART AAA_5 432 583 IPR003593 GO:0016887
Vivi1g00037 1175 NCBIfam DNA polymerase III subunit gamma/tau 400 750 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vivi1g00037 1175 Gene3D - 391 574 IPR027417 -
Vivi1g00037 1175 Pfam DNA polymerase III subunits gamma and tau domain III 630 750 IPR022754 GO:0003887
Vivi1g00037 1175 MobiDBLite consensus disorder prediction 75 151 - -
Vivi1g00037 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 424 623 IPR027417 -
Vivi1g00037 1175 MobiDBLite consensus disorder prediction 783 831 - -
Vivi1g00037 1175 MobiDBLite consensus disorder prediction 754 831 - -
Vivi1g00037 1175 Gene3D - 578 639 - -
Vivi1g00037 1175 CDD AAA 414 573 - -
Vivi1g00037 1175 MobiDBLite consensus disorder prediction 27 45 - -
Vivi1g00037 1175 FunFam DNA polymerase III subunit gamma/tau 576 639 - -
Vivi1g00037 1175 CDD HLD_clamp_pol_III_gamma_tau 576 639 IPR045085 -
Vivi1g00037 1175 Pfam DNA polymerase III, delta subunit 415 576 - -
Vivi1g00037 1175 FunFam DNA polymerase III subunit gamma/tau 396 575 - -
Vivi1g00037 1175 MobiDBLite consensus disorder prediction 768 782 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00037 Vivi-Chr1 876530 881920 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00037 404 620 Core DNA Replication Machinery Family AT1G63160 24.885 6.91e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00037 - - gmx:100814391 1469.91