Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00030 ATGGAACTTTCTAGCAACCAAGATGGTGAAATCCAAATCCCAACTAATAATTATGTTGCTGTTACTACCAATGGACATGGTCATCATCATCACATGATTCATCATCATCCTCCACCACCGCCTTCTCTTCTACACCATCACAATAATAACATCATAACATCTTCCTCAGCCGCAGCAGTGCCAGTACCAGTGGCAGTAGTTCCTCAGAGTCAGAACCCTTCAATTAATGGCACAACCACCACAACCACAAACTCTACTGGTGTAGAACTAGATCTTGATCAATCCTCCTACAAGAAACCGTTATCACAAGTGGTGGTGAAGTACAGAGAATGCTTGAAAAACCATGCAGCTGCAATGGGAGGAAATGCAACAGATGGTTGCGGTGAGTTCATGCCGAGCGGTGAACAAGGTTCCATAGAAGCACTCAACTGTTCAGCTTGCCATTGTCACAGAAACTTCCATAGAAAAGAAATCGAAGGTGAAACTGATGAAGAAAACTACCAACACCACAACCATAACTCACCTTTCAGCTTCAACTTCAACAGACAACAACAACAACAACAACATCACAGCATGAGGAAATTCATGTTACCTCTTCCTGATCAACCTCTTGGCCTCGGCTACCACCACCACACTGCATCAGCAGCAACAGGTAACCACAACAACAACAACAATATTATCCTTCCTTCTAGAGCTGTAACAGCACCACCACATGGACACATCATTATGCCTTTCAACTACAACATACCTTCTGAATCTGACGAACAAGAAGATCATGGGAGACAACAGGTAGTGATGAAGAAGAGGTTCAGGACAAAGTTTACACAGGAGCAGAAGGAGAAAATGCTGAACTTTGCTGAGAAAGTTGGGTGGAGATTTCAGAAGCAAGATGAATCTCTAGTGCAACAGTTCTGTGCAGAGATTGGAGTGAAGAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAACACAATCTTGCCAAAAAACAACATATTGATATTACCACTGATCATCTTCCAACTCCTTAA 1029 0.4257 MELSSNQDGEIQIPTNNYVAVTTNGHGHHHHMIHHHPPPPPSLLHHHNNNIITSSSAAAVPVPVAVVPQSQNPSINGTTTTTTNSTGVELDLDQSSYKKPLSQVVVKYRECLKNHAAAMGGNATDGCGEFMPSGEQGSIEALNCSACHCHRNFHRKEIEGETDEENYQHHNHNSPFSFNFNRQQQQQQHHSMRKFMLPLPDQPLGLGYHHHTASAATGNHNNNNNIILPSRAVTAPPHGHIIMPFNYNIPSESDEQEDHGRQQVVMKKRFRTKFTQEQKEKMLNFAEKVGWRFQKQDESLVQQFCAEIGVKRRVLKVWMHNNKHNLAKKQHIDITTDHLPTP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00030 342 NCBIfam homeobox domain, ZF-HD class 267 323 IPR006455 -
Vivi1g00030 342 SUPERFAMILY Homeodomain-like 257 328 IPR009057 -
Vivi1g00030 342 FunFam Zinc-finger homeodomain protein 2 254 328 - -
Vivi1g00030 342 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 108 157 IPR006456 -
Vivi1g00030 342 Pfam ZF-HD protein dimerisation region 106 158 IPR006456 -
Vivi1g00030 342 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 107 158 IPR006456 -
Vivi1g00030 342 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 82 326 - -
Vivi1g00030 342 Gene3D - 251 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00030 Vivi-Chr1 758758 760714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00030 104 329 ZF-HD Transcription Factor Family AT2G02540 51.092 6.91e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Vivi1g00030 ZF-HD_dimer 7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00030 - - tpra:123910799 401.364