Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00019 ATGATTTTAGCCATCGCTGCAGCTGCTCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGATCTGGCATTCCTGAGGTCAAAGCATATCTCAACGGCGTAGATGCTCCTTCTATATTGGCTACAAGAACCCTCTTTGTAAAGATTTTTGGTTCAATTTTCGGGGTTGCAGCTGGTTTTGTTGTGGGTAAGGAAGGGCCTATGGTGCATACCGGTGCTTGCATAGCTAATTTACTTGGACAAGGCGGGTCTACAAAATATGGACTGACCTGGAAAGGGTTCAGACAATTTAAAAATGACAGAGACCGAAGGGATTTGATCACATGTGGTGCGGCTGCTGGCGTTGCGGGTGCTTTCCGTGCCCCGGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCCTGGTGGAGGAGTGCTCTTCTGTGGCGAACATTTTTCACGACAGCTGTCGTAGCTGTAGTGCTGAAAGGTTTCATGGAATATTGCAAGGATGAAAACTGTGGTCTTTTTGGAGAAGGAGGTTTGATCATGTTTGAAGTTGATTATGCAAAGCCGTCATACAGCATACCTGATCTACTGGTAGTTATATTTCTTGGAGTTGTTGGAGGTCTTTTGGGAAGTCTTTACAATTTTCTCGTCGATAAGGTCCTTCGCACTTACAGCATCATTAATGAGAGAGGACCTATATTTAAGGTAATACTTGTGATGATTATATCGTTTTTGACCTCTTGCTGTTCATTTGGGGTTCCTTGGCTATCAAAGTGCATGCCTTGTCCTCCTCAAGCGGCGGATCAGTGCCCAACCGTAGGGCGTTCCGGACACTACAAGAATTTCCAGTGTCCTCCTAATCACTACAATGACCTCGCTTCTCTCTTTTTTACTACCAATGATGATGCTATCCGCAACCTCTTTATTGCTGGCACTGACAAAAGATTCCTTCTCTCCAGTCTCCTAATATTCTTTGTGACAATCTACTTCCTCGGAATCATCACTTATGGAATTGCGATTCCCTCAGGGCTGTTCATTCCGGTGATACTTGCAGGGGCGTCTTATGGACGCGTTGCAGGAAGTCTGTTAAGTCCATTCACAGTTCTGGATGTTGGTTTGTTTGCACTCTTGGGAGCTGCATCCTTCCTTGGTGGCACAATGAGAATGACAGTTTCTCTATGTGTCATACTTCTTGAACTCACTAACAACCTCCTCATGCTACCATTGGTCATGTTGGTTCTCTTGATCTCAAAGTCCGTGGCAGATTGTTTTAACAAAGGTGTTTATGATCAGATGGTGGAAATGAAGGGGCTGCCTTATTTAGAAGCGCATGCAGAACCTTACATGAGGCAGTTAGCTGCGGGGGATGTGGTTTCTAGTCCGCTGTTTATGTTCTCTGGGATTGAAAAAGTGGGGAATATCCTGCACACTTTGAAGGTGACGCGGCATAACGGTTTTCCTGTGATTGACGAGCCCCCATTCTCAGATGAACAAGAGTTGTGTGGATTGGTATTGAGGTATCATCTGCTGATAGTTCTTAAACACAAGGTATTTACTACTAGCCCAAGGGGGTCATCCTCGATTTTGAAAAAGTTGAGCGCACATGATTTTGGAAAGCCAGGTGCAGGGAAGGGAATAACACTGGAGGAGTTAGAGATATCGGATGAGGAGATGGAAATGTATGTTGATCTGCATCCTATTACCAACAGGTCATCCTATACAGTGTTGGAAACAACGTCTCTAGCGAAAGCTGCTATTCTTTTCCGCGAGCTTGGCCTCAGGCACTTGTTGGTCGTCCCAAAGAAACCCGGAAGACCTCCAGTGGTAGGGATCCTGACAAGGCACGACTTGATGGCGGAACATGTATTGGGACTGTACCCTCACATTGTGCCCACAAGGAAGCGGAGTCATTATCAAGAAACACATAGTCATTTATAG 1926 0.4574 MILAIAAAALCAYIAPAAAGSGIPEVKAYLNGVDAPSILATRTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSTKYGLTWKGFRQFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLKGFMEYCKDENCGLFGEGGLIMFEVDYAKPSYSIPDLLVVIFLGVVGGLLGSLYNFLVDKVLRTYSIINERGPIFKVILVMIISFLTSCCSFGVPWLSKCMPCPPQAADQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGTDKRFLLSSLLIFFVTIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQMVEMKGLPYLEAHAEPYMRQLAAGDVVSSPLFMFSGIEKVGNILHTLKVTRHNGFPVIDEPPFSDEQELCGLVLRYHLLIVLKHKVFTTSPRGSSSILKKLSAHDFGKPGAGKGITLEELEISDEEMEMYVDLHPITNRSSYTVLETTSLAKAAILFRELGLRHLLVVPKKPGRPPVVGILTRHDLMAEHVLGLYPHIVPTRKRSHYQETHSHL 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00019 641 Pfam CBS domain 566 614 IPR000644 -
Vivi1g00019 641 PRINTS Plant CLC chloride channel signature 164 171 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g00019 641 PRINTS Plant CLC chloride channel signature 146 156 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g00019 641 PRINTS Plant CLC chloride channel signature 132 140 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g00019 641 PRINTS Plant CLC chloride channel signature 288 304 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g00019 641 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 2 620 - -
Vivi1g00019 641 SUPERFAMILY Clc chloride channel 2 440 IPR014743 -
Vivi1g00019 641 Gene3D Clc chloride channel 1 437 - -
Vivi1g00019 641 PRINTS Chloride channel signature 16 33 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00019 641 PRINTS Chloride channel signature 336 356 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00019 641 PRINTS Chloride channel signature 47 66 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00019 641 PRINTS Chloride channel signature 111 130 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00019 641 PRINTS Chloride channel signature 368 384 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00019 641 PRINTS Chloride channel signature 386 405 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00019 641 PRINTS Chloride channel signature 424 438 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00019 641 Pfam Voltage gated chloride channel 4 418 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00019 641 CDD CBS_pair_voltage-gated_CLC_euk_bac 450 616 - -
Vivi1g00019 641 SMART cbs_1 567 618 IPR000644 -
Vivi1g00019 641 SMART cbs_1 457 510 IPR000644 -
Vivi1g00019 641 SUPERFAMILY CBS-domain pair 441 615 IPR046342 -
Vivi1g00019 641 Gene3D - 438 620 IPR046342 -
Vivi1g00019 641 ProSiteProfiles CBS domain profile. 564 628 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00019 Vivi-Chr1 387776 390635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00019 1 629 Ion Channels AT5G49890 75.436 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00019 K05016 - jre:108988922 921.383