Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1g00018 ATGGTTATGGAAATGGAGGAAGAAATGGACGTGGAGCATATGGGGCACGAGGAAGAGAGAGTAGGGATTCTTATATCATCAAGATCATCATCAACAACAACAGGATCTGGATCTGGAATCCGAGAGCCTCTTCTTCCCAAGAATAGCAGACTCAATACCACTTCTCAGCATGCTATTGTTGGAGCCAATGTTTGTCCCATCGAAAGTCTCGACTACGAGATCATTGAGAATGATATATTCAAACAAGACTGGAGGTCTAGAGCAAAATCTGAGATAGTACAGTACGTCTACCTCAAATGGACCTTTGCACTTCTTATTGGATTAGGTACAGGCGTTACCGCATTTTTCAGTAACATTGGAGTTGAGAATATTGCTGGTGTCAAGCTTAATCTCACCAACGATCTCATGCTTAATCAAAAGTTTCATCATGCTTTTGCAGTGTTTGCTGGTTGTAACATGATTTTAGCCATCGCTGCAGCTGCTCTCTGTGCCTACATTGCCCCTGCAGCAGCAGGATCTGGCATTCCTGAGGTCAAAGCATATCTCAACGGCGTAGATGCTCCTTCTATATTGGCTACAAGAACCCTCTTTGTAAAGATTTTTGGTTCAATTTTCGGGGTTGCAGCTGGTTTTGTTGTGGGTAAGGAAGGGCCTATGGTGCATACCGGTGCTTGCATAGCTAATTTACTTGGACAAGGCGGGTCTACAAAATATGGACTGACCTGGAAAGGGTTCAGACAATTTAAAAATGACAGAGACCGAAGGGATTTGATCACATGTGGTGCGGCTGCTGGCGTTGCGGGTGCTTTCCGTGCCCCGGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCCTGGTGGAGGAGTGCTCTTCTGTGGCGAACATTTTTCACGACAGCTGTCGTAGCTGTAGTGCTGAAAGGTTTCATGGAATATTGCAAGGATGAAAACTGTGGTCTTTTTGGAGAAGGAGGTTTGATCATGTTTGAAGTTGATTATGCAAAGCCGTCATACAGCATACCTGATCTACTGGTAGTTATATTTCTTGGAGTTGTTGGAGGTCTTTTGGGAAGTCTTTACAATTTTCTCGTCGATAAGGTCCTTCGCACTTACAGCATCATTAATGAGAGAGGACCTATATTTAAGGTAATACTTGTGATGATTATATCGTTTTTGACCTCTTGCTGTTCATTTGGGGTTCCTTGGCTATCAAAGTGCATGCCTTGTCCTCCTCAAGCGGCGGATCAGTGCCCAACCGTAGGGCGTTCCGGACACTACAAGAATTTCCAGTGTCCTCCTAATCACTACAATGACCTCGCTTCTCTCTTTTTTACTACCAATGATGATGCTATCCGCAACCTCTTTATTGCTGGCACTGACAAAAGATTCCTTCTCTCCAGTCTCCTAATATTCTTTGTGACAATCTACTTCCTCGGAATCATCACTTATGGAATTGCGATTCCCTCAGGGCTGTTCATTCCGGTGATACTTGCAGGGGCGTCTTATGGACGCGTTGCAGGAAGTCTGTTAAGTCCATTCACAGTTCTGGATGTTGGTTTGTTTGCACTCTTGGGAGCTGCATCCTTCCTTGGTGGCACAATGAGAATGACAGTTTCTCTATGTGTCATACTTCTTGAACTCACTAACAACCTCCTCATGCTACCATTGGTCATGTTGGTTCTCTTGATCTCAAAGTCCGTGGCAGATTGTTTTAACAAAGGTGTTTATGATCAGATGGTGGAAATGAAGGGGCTGCCTTATTTAGAAGCGCATGCAGAACCTTACATGAGGCAGTTAGCTGCGGGGGATGTGGTTTCTAGTCCGCTGTTTATGTTCTCTGGGATTGAAAAAGTGGGGAATATCCTGCACACTTTGAAGGTGACGCGGCATAACGGTTTTCCTGTGATTGACGAGCCCCCATTCTCAGATGAACAAGAGTTGTGTGGATTGGTATTGAGGTATCATCTGCTGATAGTTCTTAAACACAAGGTATTTACTACTAGCCCAAGGGGGTCATCCTCGATTTTGAAAAAGTTGAGCGCACATGATTTTGGAAAGCCAGGTGCAGGGAAGGGAATAACACTGGAGGAGTTAGAGATATCGGATGAGGAGATGGAAATGTATGTTGATCTGCATCCTATTACCAACAGGTCATCCTATACAGTGTTGGAAACAACGTCTCTAGCGAAAGCTGCTATTCTTTTCCGCGAGCTTGGCCTCAGGCACTTGTTGGTCGTCCCAAAGAAACCCGGAAGACCTCCAGTGGTAGGGATCCTGACAAGGCACGACTTGATGGCGGAACATGTATTGGGACTGTACCCTCACATTGTGCCCACAAGGAAGCGGAGTCATTATCAAGAAACACATAGTCATTTATAG 2382 0.4496 MVMEMEEEMDVEHMGHEEERVGILISSRSSSTTTGSGSGIREPLLPKNSRLNTTSQHAIVGANVCPIESLDYEIIENDIFKQDWRSRAKSEIVQYVYLKWTFALLIGLGTGVTAFFSNIGVENIAGVKLNLTNDLMLNQKFHHAFAVFAGCNMILAIAAAALCAYIAPAAAGSGIPEVKAYLNGVDAPSILATRTLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSTKYGLTWKGFRQFKNDRDRRDLITCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLKGFMEYCKDENCGLFGEGGLIMFEVDYAKPSYSIPDLLVVIFLGVVGGLLGSLYNFLVDKVLRTYSIINERGPIFKVILVMIISFLTSCCSFGVPWLSKCMPCPPQAADQCPTVGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFIAGTDKRFLLSSLLIFFVTIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFTVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQMVEMKGLPYLEAHAEPYMRQLAAGDVVSSPLFMFSGIEKVGNILHTLKVTRHNGFPVIDEPPFSDEQELCGLVLRYHLLIVLKHKVFTTSPRGSSSILKKLSAHDFGKPGAGKGITLEELEISDEEMEMYVDLHPITNRSSYTVLETTSLAKAAILFRELGLRHLLVVPKKPGRPPVVGILTRHDLMAEHVLGLYPHIVPTRKRSHYQETHSHL 793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1g00018 793 SMART cbs_1 719 770 IPR000644 -
Vivi1g00018 793 SMART cbs_1 609 662 IPR000644 -
Vivi1g00018 793 CDD ClC_6_like 68 589 - -
Vivi1g00018 793 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 42 772 - -
Vivi1g00018 793 MobiDBLite consensus disorder prediction 26 48 - -
Vivi1g00018 793 Gene3D - 590 771 IPR046342 -
Vivi1g00018 793 Gene3D Clc chloride channel 91 589 - -
Vivi1g00018 793 PRINTS Chloride channel signature 263 282 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00018 793 PRINTS Chloride channel signature 520 536 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00018 793 PRINTS Chloride channel signature 168 185 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00018 793 PRINTS Chloride channel signature 488 508 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00018 793 PRINTS Chloride channel signature 576 590 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00018 793 PRINTS Chloride channel signature 538 557 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00018 793 PRINTS Chloride channel signature 199 218 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00018 793 Pfam CBS domain 718 766 IPR000644 -
Vivi1g00018 793 FunFam Chloride channel ClC3 91 406 - -
Vivi1g00018 793 SUPERFAMILY CBS-domain pair 593 767 IPR046342 -
Vivi1g00018 793 PRINTS Plant CLC chloride channel signature 316 323 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g00018 793 PRINTS Plant CLC chloride channel signature 440 456 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g00018 793 PRINTS Plant CLC chloride channel signature 298 308 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g00018 793 PRINTS Plant CLC chloride channel signature 73 81 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g00018 793 PRINTS Plant CLC chloride channel signature 284 292 IPR002251 GO:0005247|GO:0006821|GO:0016020
Vivi1g00018 793 ProSiteProfiles CBS domain profile. 716 780 IPR000644 -
Vivi1g00018 793 Pfam Voltage gated chloride channel 156 570 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Vivi1g00018 793 SUPERFAMILY Clc chloride channel 77 592 IPR014743 -
Vivi1g00018 793 CDD CBS_pair_voltage-gated_CLC_euk_bac 602 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi1g00018 Vivi-Chr1 387236 390635 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1g00018 5 781 Ion Channels AT5G49890 71.923 0.0 1094
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1g00018 K05016 - qsa:O6P43_012129 1090.1