LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi197g00021	ATGAGTGATGTTGTTTCTGCCACCAAGAAGAAGTTGCTCATTAAGGAGCTTCTTCAGGGTCAAGAGTATGCTACTCAGCTGAAGTTTCTGCTTAAGAATCGTGTTGGTTTAGGTTCTGATGGGTCTGCTTCGGTTAAGGAATTGGCAGCTAATGTGCTGAGATCTTTCTCTGAGACTATTTCTGTGGTGACTTCTGAAGGTTGTAATTTTGATGAGGTTGCTTCAGAGGAAAATGGTTCATTGGTTTCTGCTTCTTGTAATGATGATGTGAAATCTGAAGATTCAAGTGAGAGTAAGAAGAGATTGTTACCTAATAACACTAAAGATCGAAGAGGTTCCTACAAAAGAAGGAAGACTGATGAGACAAGAACCATAGTCTCTAAAACAACTGGTGACATTCATTCCTGGAGAAAGTACGGACAGAAGGAAATCCTCAATTCTCAATTTCCTAGGAGCTACTTTAGGTGTACCCGGAAGCATGATCAAGGTTGCAAAGCAACCAAACAGGTACAATTGATACAAGAGAATCCAGAGACATACCAAATTACCTACATTGGGTTTCACACATGCAATGCCACTCTACATACTCCACAAATGGTCACATTTTCTTCAGATACCAATTGGGACACATTTCTTGTGAATTCTCAACCTCACTCAAAAGAAGTTCTTACAAATTATATTCAACAGGATTCCCCTATTATGAGCTCAGAAAGAGCAATTGTGAAACAAGAATATCCCAACAACGACGACAGTACTACTACTCCGAGGAGTGTTCTCGCCGATGATTTATTCGATGCGAACATGTGGTCTGATTTTAAGGATTTTGAACTATCCAAGCCAGATGCTAGTGTGTATTCATGTAGTGAATCTCAAAACCTTGAAATTGGTTTTGGGGTGTTTTCTGATTTCAGCAATGATTTAGTATATTTTGATGAAAGGCATTTGATGTAA	951	0.3901	MSDVVSATKKKLLIKELLQGQEYATQLKFLLKNRVGLGSDGSASVKELAANVLRSFSETISVVTSEGCNFDEVASEENGSLVSASCNDDVKSEDSSESKKRLLPNNTKDRRGSYKRRKTDETRTIVSKTTGDIHSWRKYGQKEILNSQFPRSYFRCTRKHDQGCKATKQVQLIQENPETYQITYIGFHTCNATLHTPQMVTFSSDTNWDTFLVNSQPHSKEVLTNYIQQDSPIMSSERAIVKQEYPNNDDSTTTPRSVLADDLFDANMWSDFKDFELSKPDASVYSCSESQNLEIGFGVFSDFSNDLVYFDERHLM	316

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi197g00021	316	Pfam	WRKY DNA -binding domain	132	191	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi197g00021	316	ProSiteProfiles	WRKY domain profile.	132	193	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi197g00021	316	MobiDBLite	consensus disorder prediction	84	122	-	-
	Vivi197g00021	316	MobiDBLite	consensus disorder prediction	90	122	-	-
	Vivi197g00021	316	PANTHER	WRKY TRANSCRIPTION FACTOR 21-RELATED	16	211	IPR044810	GO:0003700
	Vivi197g00021	316	SUPERFAMILY	WRKY DNA-binding domain	128	191	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi197g00021	316	Gene3D	WRKY domain	116	193	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi197g00021	316	SMART	WRKY_cls	130	192	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi197g00021	9	232	WRKY Transcription Factor Family	AT3G56400	43.231	3.62e-51	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vivi197g00021		WRKY	7.4e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi197g00021	-		-	tpra:123913408	449.899