Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi197g00018 ATGGCTTCTGCTTCATCTTCAACTTCTTCAAATTGGGTCATGGAAAGTGGTGACATTCCTCATGTTCTTGCTGTTGATGATAGTCTTATTGATCGCAAACTTGTTGAGAAACTCCTTAGAAATTCCTCCTGCAGAGTTACAACTGCTGAAAATGGGCTAAGGGCATTGGAGTTATTGGGCTTGACAAATGGTGAACACAACACCTTGAATGGAAGATCCAAAGTAAACTTAATCATCACAGACTATTGCATGCCAGGGATGACAGGCTATGAGTTACTTAAGAAAATCAAGCAATCATCTGTAATGAGGGAGGTCCCAGTGGTAATCATGTCATCTGAGAACATACCAACAAGAATCAACAAGTGTCTAGAAGAAGGAGCTGAAATGTTCATGCTAAAGCCACTCAAACAATCTGATGTAAGAGAACTGACATGTCAGTTAATGAATCTAGGAAGGTGA 459 0.4009 MASASSSTSSNWVMESGDIPHVLAVDDSLIDRKLVEKLLRNSSCRVTTAENGLRALELLGLTNGEHNTLNGRSKVNLIITDYCMPGMTGYELLKKIKQSSVMREVPVVIMSSENIPTRINKCLEEGAEMFMLKPLKQSDVRELTCQLMNLGR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi197g00018 152 ProSiteProfiles Response regulatory domain profile. 21 148 IPR001789 GO:0000160
Vivi197g00018 152 Gene3D - 21 152 - -
Vivi197g00018 152 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 147 IPR045279 GO:0009736
Vivi197g00018 152 SMART REC_2 20 144 IPR001789 GO:0000160
Vivi197g00018 152 CDD REC_typeA_ARR 22 143 - -
Vivi197g00018 152 SUPERFAMILY CheY-like 20 149 IPR011006 -
Vivi197g00018 152 FunFam Two-component response regulator ORR5 20 150 - -
Vivi197g00018 152 Pfam Response regulator receiver domain 22 142 IPR001789 GO:0000160
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi197g00018 21 149 Response Regulator Gene Family AT3G56380 72.519 6.00e-63 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vivi197g00018 Response_reg 9.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi197g00018 K14492 - gmx:100499827 260.766