Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi197g00013 ATGTCCTCCGATGACATCAATCTCGGTCCTGATCAGAGAATCGAAAACGCCCTCACTTCTCCACTCGTCTTCCAGGACGACACTTTACGCTTCAACTGCGACGGTGCACCACCGCGGCAGGTCGGCGATCCGGTTCTTAAACCCCGGGAAGTTGGCGGTTTCATCGACGACAAAATGTTTACTGTAAATCGTGACCGCTTTTTCACCTCCCAGGGCGCCGAGTTCCGCCGTAACGTTTTTGCTGATCGCTCCGACCATAGGGATACTTCAGATGTACTGAACTGGAGCGGGGGAACTTCCACTAGCGACGATTCGGACGGAGAAGACGATGAAGATGACGATGAAGGCGAAGATGGCGGCGAAGGCGTCAGTATCGTTGACGGGAGCAACCGGAGTTCAAATGCAATTATTGACGTTAACAATAACAACGGTGGTGGTGTTGTAATTGGAAAATCCCAGCATCATTCCCCTTATGTTTCTGGTAGAGAGATGTTGGGAAAGGACGGTGAGATTGTACAGATGGTTCATAACCATGTGAGTAGTAGTGTTGGGGAAGATCATCAGCAAGAAAGATTAGGTAAAACTCAGAACTCTGCAACTGTTGCTGAAGCTGATTGTGAGGAGTATTATTCCCACTATCTTCAAGGTACGGAAGGGTCGCCTTCTGTACAGAAAGTTATGGTGGATGACAATGGTTGTGGGTTTAGTGGAAGAAAGAATGCTGTGTATTCAAGTGAGTCAGGGGAGTCATTGAGGGCAATTCTTTCAGATCCTGTTACTGGAACTCTTATGGATGATGCAATGATATTACCTTGTGGACATTCTTTTGGCGGAGGTGGAGTACAGCATGTTATTAGAATGAAAGCTTGTTGTACTTGCTCTCAACCCACACTGGAGGAATCAATATCTCCAAATCTTTCACTCCAAGCTGCTGTGCAGGCGTACCGTCGGGAAGAGGAATCACAATTTTACCGGTCATCCAAAAGAAGAAGAGAAAGATTTGATCAGGGTGGTTTAGGAGAGTGTGCTGTTTTTGAACCACCAAGGAACAGAGGTGTTCAATTTCCATTTGCTGTGACAGACAGGGTTATCATAAAGGGAAACAAAAGGACACCACAACGCTTTGTTGGAAGGGAAGCTATTGTAACAACACAATGCCTGAATGGGTGGTATGTGGTGAAGACATTGGACAATGCAGAGAGTGTAAAATTGCAGTATCGTTCCCTTGCTAAGGTTTCTGATGATCCTTCAAAACTTGTCTCCAGCAATACGGGACCTAATTGGCTTCAGATCAGCCGCACACCATCATAA 1311 0.4638 MSSDDINLGPDQRIENALTSPLVFQDDTLRFNCDGAPPRQVGDPVLKPREVGGFIDDKMFTVNRDRFFTSQGAEFRRNVFADRSDHRDTSDVLNWSGGTSTSDDSDGEDDEDDDEGEDGGEGVSIVDGSNRSSNAIIDVNNNNGGGVVIGKSQHHSPYVSGREMLGKDGEIVQMVHNHVSSSVGEDHQQERLGKTQNSATVAEADCEEYYSHYLQGTEGSPSVQKVMVDDNGCGFSGRKNAVYSSESGESLRAILSDPVTGTLMDDAMILPCGHSFGGGGVQHVIRMKACCTCSQPTLEESISPNLSLQAAVQAYRREEESQFYRSSKRRRERFDQGGLGECAVFEPPRNRGVQFPFAVTDRVIIKGNKRTPQRFVGREAIVTTQCLNGWYVVKTLDNAESVKLQYRSLAKVSDDPSKLVSSNTGPNWLQISRTPS 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi197g00013 436 ProSiteProfiles U-box domain profile. 250 322 IPR003613 GO:0004842|GO:0016567
Vivi197g00013 436 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 88 420 - -
Vivi197g00013 436 MobiDBLite consensus disorder prediction 103 121 - -
Vivi197g00013 436 SUPERFAMILY RING/U-box 249 321 - -
Vivi197g00013 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 250 320 IPR013083 -
Vivi197g00013 436 MobiDBLite consensus disorder prediction 86 137 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi197g00013 198 429 Plant U-box Gene Family AT5G05230 59.833 1.98e-85 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi197g00013 - - gmx:100791099 540.036