Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi197g00010 ATGGCTGCCCGCCTTCACCGTCTATTGCTCGACGCGGATTCAACCTCAACATCAACAAGTGACATGAATAGGCCAAGAGAGTCATTCACAGCCACAGGTGATTCGAATTTTGACACCAACATGGTGTTTATCTTAGCAGCTTTACTTTGTGCACTTATTTTTGCATTAGGCCTTAACTCAATTGTGAGGTGTGCTCTAAGATGTAGTCACAGATATGCTTTCGAGACACCGGATGAAACAATTGCTCGTTTAGCTTCAAAGGGTTTGAAGAAGAGTGCGTTGCGTAAGATCCCTATAACTGTTTATGGTTCAGGAGGTAGTGCTAATTCTAGTACTAGTTTTGCAGCTACTGAATGTCCAATTTGTCTTGGGGAGTTTGTGGATGGAGAGAAAGTTAGAGTGTTGCCAAAATGTAACCATGGATTTCATGTAAGGTGTATAGATAAATGGCTGCTTTCACACTCCTCTTGTCCTACTTGTAGACAGTCTTTGATTGAGTATCCAAATCCAAGTAGTTCTTCTGAAGGTTCATCTGTAGTTGTGAATGTTGTTCCTGTGGCTGCAGGAACCACAAACCAACGGCTTTAA 588 0.4218 MAARLHRLLLDADSTSTSTSDMNRPRESFTATGDSNFDTNMVFILAALLCALIFALGLNSIVRCALRCSHRYAFETPDETIARLASKGLKKSALRKIPITVYGSGGSANSSTSFAATECPICLGEFVDGEKVRVLPKCNHGFHVRCIDKWLLSHSSCPTCRQSLIEYPNPSSSSEGSSVVVNVVPVAAGTTNQRL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi197g00010 195 PANTHER RING-H2 FINGER PROTEIN ATL78 21 176 IPR044602 GO:0016567|GO:0016740
Vivi197g00010 195 CDD RING-H2_EL5-like 118 161 - -
Vivi197g00010 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 75 166 IPR013083 -
Vivi197g00010 195 SMART ring_2 119 160 IPR001841 -
Vivi197g00010 195 SMART FANCL_C_2 115 191 - -
Vivi197g00010 195 Pfam Ring finger domain 118 161 IPR001841 -
Vivi197g00010 195 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Vivi197g00010 195 SUPERFAMILY RING/U-box 118 168 - -
Vivi197g00010 195 FunFam RING-H2 finger protein ATL72-like 80 165 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi197g00010 5 184 C3H Transcription Factor Family AT3G10910 51.579 5.30e-57 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi197g00010 - K19040 mtr:25489830 274.633