Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi196g00003 ATGGAACAAAAGGGAAAGGTGTTAATGCAAAAATATGAGTTGGGAAGATTATTAGGCCAAGGAACGTTTGCGAAGGTCTACCATGCTAGGAACCTTGTAACTGGCGTGAGTGTGGCCATTAAAGTAGTTGATAAAGAAAAGGTTTTGAAAGTCGGGATGGTTGAACAAATTAAGCGGGAAATTTCGGCCATGAAATTAGTCAGACATCCGAATGTGGTTGAGCTTTACGAGGTAATGGCCACTAAAACCAAAATTTTCATTATCATGGAGTATGCAAAAGGTGGCGAGCTCTTCAACAAGGTAGCCAAGGGAAGGCTCAAGGTTGATGTTGCTAGGGGATATTTTCAGCAACTTATGAGCGCAGTTGACTACTGCCATAGCAGGGGTGTGTGTCATCGTGATTTAAAACCTGAAAATCTACTATTGGATGAAAATGAGAATTTGAAGGTTTCGGATTTTGGTTTAAGTGCCCTTTCTGAATCGAAGCGCCAAGATGGGTTACTTCACACTACATGTGGTACCCCTGCGTATGTTGCTCCAGAAGTGATACACAGAAAGGGTTACGATGGAAGCAAAGCTGATTTATGGTCGTGTGGGGTAATCTTGTTTGTTCTATTGGCTGGTTCTCTTCCATTCCAAGATCAAAATCTGATGGAGATGTACAGGAAAATCAGTCAAGGGGAATTCAAATTTCCTAAATGGTTTGCAGTAGAGGTTCGGCGGTTGTTGTCCAAAATATTGGATCCAAATCCAAAGACTCGGATATCAATGGCCAAGATCATGGAAAGTTCTTGGTTTAAAAAGGGGTTAGAGAAGCCGGTTGTTATCGAGACTGAAAACCATGACCCTACTACTCTGCATGCTGATGGAGTGTTTGAAGTATCCGAATACGGTAGTGGTTCTATTACGGAGACAAAACAACAGGCGAAGCCTTGCAACAACTTAAACGCCTTTGATATCATCTCCTTCTCATCTGGTTTTGATCTATCCGGTTTGTTCGAAGACACGATTCTAGAAAAAGAGACGCGGTTTTTGTCCAACAAGCCAGCCTCAATTATAATCTCTAAGCTGGAAGAAATTTGCAAGTGTCTTTGCTTGAAAATTAAGAAAAAAGACGGAGGTTTGTTAAAGCTGGAAAGTAGGAAAGGGACACTGAATATCGATGCTGAAATTTTCGAGATTTCCCCTCATTTCCATCTTGTGGAACTTAAGAAGTCGGACGGGCACACATTGGAGTATCAGAGGCTTTTGCAGCATGAGATTAGACCAGCACTTAAGGACATTGTGTGGGACTGGCTAGGAGAACCGCCACTGCAACTTCAACATGAAGTAGTGCAGGAGGAACAACAACCATCTCTTACTGCTCAAATTTAG 1374 0.4214 MEQKGKVLMQKYELGRLLGQGTFAKVYHARNLVTGVSVAIKVVDKEKVLKVGMVEQIKREISAMKLVRHPNVVELYEVMATKTKIFIIMEYAKGGELFNKVAKGRLKVDVARGYFQQLMSAVDYCHSRGVCHRDLKPENLLLDENENLKVSDFGLSALSESKRQDGLLHTTCGTPAYVAPEVIHRKGYDGSKADLWSCGVILFVLLAGSLPFQDQNLMEMYRKISQGEFKFPKWFAVEVRRLLSKILDPNPKTRISMAKIMESSWFKKGLEKPVVIETENHDPTTLHADGVFEVSEYGSGSITETKQQAKPCNNLNAFDIISFSSGFDLSGLFEDTILEKETRFLSNKPASIIISKLEEICKCLCLKIKKKDGGLLKLESRKGTLNIDAEIFEISPHFHLVELKKSDGHTLEYQRLLQHEIRPALKDIVWDWLGEPPLQLQHEVVQEEQQPSLTAQI 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi196g00003 457 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi196g00003 457 CDD STKc_SnRK3 11 265 - -
Vivi196g00003 457 CDD CIPK_C 316 426 - -
Vivi196g00003 457 FunFam Non-specific serine/threonine protein kinase 310 430 - -
Vivi196g00003 457 Gene3D Phosphorylase Kinase; domain 1 2 91 - -
Vivi196g00003 457 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi196g00003 457 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Vivi196g00003 457 Gene3D Transferase(Phosphotransferase) domain 1 92 272 - -
Vivi196g00003 457 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi196g00003 457 SUPERFAMILY Protein kinase-like (PK-like) 8 279 IPR011009 -
Vivi196g00003 457 Gene3D Kinase associated domain 1, KA1 311 431 - -
Vivi196g00003 457 Pfam NAF domain 313 370 IPR004041 GO:0007165
Vivi196g00003 457 ProSiteProfiles NAF domain profile. 310 334 IPR018451 GO:0007165
Vivi196g00003 457 FunFam Non-specific serine/threonine protein kinase 3 91 - -
Vivi196g00003 457 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Vivi196g00003 457 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 427 - -
Vivi196g00003 457 FunFam Non-specific serine/threonine protein kinase 2 308 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi196g00003 1 435 CBL-interacting serine-threonine protein kinases AT5G58380 64.018 0.0 589
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Vivi196g00003 Pkinase 1.3e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi196g00003 K07198 - gmx:100811923 679.863