LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi193g00022	ATGGGAACTTGCTGGAGTTCTCTTCCACCTAACAACCATCCAACTCCATCTCCAACCGGAACTGTTACACCTGCAGGAACATATAATTCTCAGACAACAAGTGGAAGCTATGGAACTAGCACTACAACCACTAGAACTACAACTTTCAATTCTACTTCTACCACTTCTTCTGGTAGTGGAGGTGGAAGCAGTAATAACATGTCCTCCTTCTTAAACAGCGCCAATTTCTCCTCTTCTGATTTTTCAATCGGTGGTCAGATCTTACCTACTTCTAATCTAAGAGTCTACACTTTCGCCGAATTGAAAGCTTCTACCAAGAATTTCAAACCTGAAACACTTCTCGGTGAAGGAGGTTTTGGAAAAGTCTACAGAGGTTGGCTTGATGGAATCACCATTGCCGTCAAAAAATTGAACTCCGAAAGTTTACAAGGTCTCCAGGAATGGCAGTCAGAGATACATTTTCTAGGTCGACTTTACCATCCTAACCTTGTTAAACTCTTGGGATATTGTTATGAGGATACAGAGCTTCTTCTTGTCTACGAATACATGCAGAAGGGTAGTTTGGAAAATCACCTCTTTGGAAGAGGCGCTGTTGTTCAACCACTTCCTTGGGAGCTGAGGCTTAAGATAGCAATCGGAGCAGCTACTGGACTTTCGTTCTTGCATACAGCAGATAGAGAAATTATTTACAGAGATTTTAAGGCCTCTAATATATTGCTTGATGGGTCCTATAATGCCAAGATATCAGATTTTGGGTTGGCAAAACTGGGTCCTTCGGCTAGTCAATCGCATTTGTCTACAACAGTGATGGGAACACCAGGTTATGCAGCTCCTGAATATATGCAAACAGGGCATCTATATGTAAAGAGTGATGTGTATGGTTTTGGAGTTGTTTTGGTTGAGATACTGACGGGCTTACGGGCGATAGATCTCAACCGCCCAAGCGGGTATCACAGTCTAACGGATTGGATCAAACCGCACCTACAGGAAAGAAGAAAATTGAAGAAGATTATGGATCCTCAATTGGGAGGCAAGTATCCAATCAAAGCTGCACTTACTATATCCAAGGTTGCTTCTAGGTGTCTTGCACCTGAGCCCAAAATGCGCCCATCCATGAAGGATGTTTTGGAGATCTTGAAAGGAACTCAAGCTTCCACTGACAAAGACGTCGAGGTTAGGGGTCAAAATTAA	1191	0.4282	MGTCWSSLPPNNHPTPSPTGTVTPAGTYNSQTTSGSYGTSTTTTRTTTFNSTSTTSSGSGGGSSNNMSSFLNSANFSSSDFSIGGQILPTSNLRVYTFAELKASTKNFKPETLLGEGGFGKVYRGWLDGITIAVKKLNSESLQGLQEWQSEIHFLGRLYHPNLVKLLGYCYEDTELLLVYEYMQKGSLENHLFGRGAVVQPLPWELRLKIAIGAATGLSFLHTADREIIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHLSTTVMGTPGYAAPEYMQTGHLYVKSDVYGFGVVLVEILTGLRAIDLNRPSGYHSLTDWIKPHLQERRKLKKIMDPQLGGKYPIKAALTISKVASRCLAPEPKMRPSMKDVLEILKGTQASTDKDVEVRGQN	396

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi193g00022	396	FunFam	Serine/threonine-protein kinase BIK1	75	182	-	-
	Vivi193g00022	396	MobiDBLite	consensus disorder prediction	18	64	-	-
	Vivi193g00022	396	SUPERFAMILY	Protein kinase-like (PK-like)	84	379	IPR011009	-
	Vivi193g00022	396	ProSitePatterns	Protein kinases ATP-binding region signature.	114	136	IPR017441	GO:0005524
	Vivi193g00022	396	Gene3D	Phosphorylase Kinase; domain 1	84	182	-	-
	Vivi193g00022	396	Gene3D	Transferase(Phosphotransferase) domain 1	183	395	-	-
	Vivi193g00022	396	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	183	392	-	-
	Vivi193g00022	396	ProSiteProfiles	Protein kinase domain profile.	108	386	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi193g00022	396	CDD	STKc_IRAK	114	381	-	-
	Vivi193g00022	396	MobiDBLite	consensus disorder prediction	1	64	-	-
	Vivi193g00022	396	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	228	240	IPR008271	GO:0004672\|GO:0006468
	Vivi193g00022	396	PANTHER	OS01G0588500 PROTEIN-RELATED	52	382	-	-
	Vivi193g00022	396	Pfam	Protein kinase domain	111	377	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi193g00022	51	379	Glycoside Hydrolase	AT3G07070	45.808	3.44e-98	297

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Vivi193g00022		Pkinase	6.9e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi193g00022	-		-	mtr:11430234	585.104