LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi193g00021	ATGGGAACTTGCTGGAGTTCTCTTCCACCTAACAACCATCCAACTCCATCTCCAACCGGAACTGGAACATATAATTCTCAGACAACAAGTGGAAGCTATGGAACTAGCACTACAACCACTAGAACTACAACTTTCAATTCTACTTCTACCACTTCTTCTGGTAGTGGAGGTGGAAGCAGTAATAACATGTCCTCCTTCTTAAACAGCGCCAATTTCTCCTCTTCTGATTTTTCAATCGGTGGTCAGATCTTACCTACTTCTAATCTAAGAGTCTACACTTTCGCCGAATTGAAAGCTTCTACCAAGAATTTCAAACCTGAAACACTTCTCGGTGAAGGAGGTTTTGGAAAAGTCTACAGAGGTTGGCTTGATGGAATCACCATTGCCGTCAAAAAATTGAACTCCGAAAGTTTACAAGGTCTCCAGGAATGGCAGTCAGAGATACATTTTCTAGGTCGACTTTACCATCCTAACCTTGTTAAACTCTTGGGATATTGTTATGAGGATACAGAGCTTCTTCTTGTCTACGAATACATGCAGAAGGGTAGTTTGGAAAATCACCTCTTTGGAAGAGGCGCTGTTGTTCAACCACTTCCTTGGGAGCTGAGGCTTAAGATAGCAATCGGAGCAGCTACTGGACTTTCGTTCTTGCATACAGCAGATAGAGAAATTATTTACAGAGATTTTAAGGCCTCTAATATATTGCTTGATGGGTCCTATAATGCCAAGATATCAGATTTTGGGTTGGCAAAACTGGGTCCTTCGGCTAGTCAATCGCATTTGTCTACAACAGTGATGGGAACACCAGGTTATGCAGCTCCTGAATATATGCAAACAGGGCATCTATATGTAAAGAGTGATGTGTATGGTTTTGGAGTTGTTTTGGTTGAGATACTGACGGGCTTACGGGCGATAGATCTCAACCGCCCAAGCGGGTATCACAGTCTAACGGATTGGATCAAACCGCACCTACAGGAAAGAAGAAAATTGAAGAAGATTATGGATCCTCAATTGGGAGGCAAGTATCCAATCAAAGCTGCACTTACTATATCCAAGGTTGCTTCTAGGTGTCTTGCACCTGAGCCCAAAATGCGCCCATCCATGAAGGATGTTTTGGAGATCTTGAAAGGAACTCAAGCTTCCACTGACAAAGACGTCGAGGTTAGGGGTCAAAATTAA	1179	0.4275	MGTCWSSLPPNNHPTPSPTGTGTYNSQTTSGSYGTSTTTTRTTTFNSTSTTSSGSGGGSSNNMSSFLNSANFSSSDFSIGGQILPTSNLRVYTFAELKASTKNFKPETLLGEGGFGKVYRGWLDGITIAVKKLNSESLQGLQEWQSEIHFLGRLYHPNLVKLLGYCYEDTELLLVYEYMQKGSLENHLFGRGAVVQPLPWELRLKIAIGAATGLSFLHTADREIIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHLSTTVMGTPGYAAPEYMQTGHLYVKSDVYGFGVVLVEILTGLRAIDLNRPSGYHSLTDWIKPHLQERRKLKKIMDPQLGGKYPIKAALTISKVASRCLAPEPKMRPSMKDVLEILKGTQASTDKDVEVRGQN	392

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi193g00021	392	FunFam	Serine/threonine-protein kinase BIK1	71	178	-	-
	Vivi193g00021	392	Pfam	Protein kinase domain	107	373	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi193g00021	392	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	224	236	IPR008271	GO:0004672\|GO:0006468
	Vivi193g00021	392	PANTHER	OS01G0588500 PROTEIN-RELATED	48	378	-	-
	Vivi193g00021	392	Gene3D	Phosphorylase Kinase; domain 1	80	178	-	-
	Vivi193g00021	392	FunFam	protein STRUBBELIG-RECEPTOR FAMILY 8	179	388	-	-
	Vivi193g00021	392	ProSitePatterns	Protein kinases ATP-binding region signature.	110	132	IPR017441	GO:0005524
	Vivi193g00021	392	MobiDBLite	consensus disorder prediction	17	60	-	-
	Vivi193g00021	392	ProSiteProfiles	Protein kinase domain profile.	104	382	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vivi193g00021	392	SUPERFAMILY	Protein kinase-like (PK-like)	80	375	IPR011009	-
	Vivi193g00021	392	CDD	STKc_IRAK	110	377	-	-
	Vivi193g00021	392	Gene3D	Transferase(Phosphotransferase) domain 1	179	391	-	-
	Vivi193g00021	392	MobiDBLite	consensus disorder prediction	1	60	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi193g00021	47	375	Glycoside Hydrolase	AT3G07070	45.808	4.70e-98	296

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Vivi193g00021		Pkinase	6.7e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi193g00021	-		-	mtr:11430234	576.244