LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi192g00004	ATGATGGAGGAGAGAGAGAATATTCTTCATGAAGGTGTTGAATTGGAGACATCCTCATCTTTGAATTCAAGGAAGAAAAACAAGAAGGTGGAGAATAAAAGAAGGTTTAGTGATGAACAGATAAGGTCACTAGAATGTATATTTGAGTCAGAATCAAAGTTGGAGCCAAGGAAGAAGATGCAGCTTGCAAGAGATCTTGGTTTGCAGCCTAGACAAGTTGCTATATGGTTTCAAAACAGAAGAGCTAGGTGGAAATCAAAGAGGATTGAACAAGAGTATAGAAAACTTAAAGTTGAATATGATACTTTAGCTTTGAAGTTTCAGTCTCTTAAGGAAGAGAAAGAGTCTTTGCAATCAGAGGTTCAGAAGCTAAGTTATATGGTGGAAACATCTCATGAAGGTGGAAGGGAAGCTAAGGAGAATAGTACAGAAGATGGTGGATCAGGAAATGGATATAGAAACTGTATGGCTGAAACAAAGGAAAGGTTTTCAAATGAGGGTTTGGAGGACAGAATGGTAATTTACTCAGATGATCAAGATGAAAGAGGTTTAACAAGGACTGAGAAAGTTGATGACAGAGGAAATGATGTTTTGAGAAATGAAAAAATTCCATTGACAGCACTTGAAAAATGGTACAATGTTGATCCAAGTGTTATCTTAGACCAGTCATGCAGTAGTTCTCAATGGTTGGATTTTTGGACTTAG	705	0.3702	MMEERENILHEGVELETSSSLNSRKKNKKVENKRRFSDEQIRSLECIFESESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKVEYDTLALKFQSLKEEKESLQSEVQKLSYMVETSHEGGREAKENSTEDGGSGNGYRNCMAETKERFSNEGLEDRMVIYSDDQDERGLTRTEKVDDRGNDVLRNEKIPLTALEKWYNVDPSVILDQSCSSSQWLDFWT	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi192g00004	234	Pfam	Homeodomain	33	85	IPR001356	GO:0003677
	Vivi192g00004	234	Gene3D	-	21	96	-	-
	Vivi192g00004	234	SMART	HOX_1	30	91	IPR001356	GO:0003677
	Vivi192g00004	234	MobiDBLite	consensus disorder prediction	21	35	-	-
	Vivi192g00004	234	ProSiteProfiles	'Homeobox' domain profile.	27	87	IPR001356	GO:0003677
	Vivi192g00004	234	ProSitePatterns	'Homeobox' domain signature.	62	85	IPR017970	GO:0000981\|GO:0006355
	Vivi192g00004	234	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	24	158	IPR045224	GO:0003700
	Vivi192g00004	234	PRINTS	Lambda-repressor HTH signature	58	67	IPR000047	GO:0003677
	Vivi192g00004	234	PRINTS	Lambda-repressor HTH signature	67	83	IPR000047	GO:0003677
	Vivi192g00004	234	CDD	homeodomain	33	88	IPR001356	GO:0003677
	Vivi192g00004	234	Pfam	Homeobox associated leucine zipper	87	127	IPR003106	GO:0006355\|GO:0043565
	Vivi192g00004	234	Coils	Coil	79	127	-	-
	Vivi192g00004	234	MobiDBLite	consensus disorder prediction	130	153	-	-
	Vivi192g00004	234	SUPERFAMILY	Homeodomain-like	17	87	IPR009057	-
	Vivi192g00004	234	FunFam	Homeobox-leucine zipper protein ATHB-7	15	87	-	-
	Vivi192g00004	234	MobiDBLite	consensus disorder prediction	1	35	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi192g00004	24	234	Homeobox Transcription Factor Family	AT2G46680	41.453	5.93e-43	144

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Vivi192g00004		Homeodomain	2.3e-17	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi192g00004	K09338		-	gmx:100499926	296.975