Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi190g00002 ATGGGTAGTTTCAGTGGAGATGAGGATTGTCAGTTTTTTGATGCTCAAGAGGATGTTGTGTCAATTGGGTATGCGAATTCTGATGATGATAATGATAAAAGTGTGTCTGTTGATTTTGATTATGGAGTGTGGATTCGGAGTCCGAAGAGTGTGAGAGAGCGAAAGGGGGAGTTTATGAAGAGCATGGGAATGAGTTTAGATGGAATTGTTGTTGAAAATTCATTAGAGGTTGAGAAGGAAGAGATTATAGATAGAGAAAGAGGAAGTAGTGGTTGTGAAGAGGAATTTAGTTCGAGTCGGTTGTTGATGTCTTGTTGCTCTAGTGTGAGTTTTTCAGAGGAGTTAGGTTTAGGGGATAATAATAACTTGCCATGTCAAGATGAAAGTTTGGAGAAAGGAGTAGGGACTAATGTCGATAAAAAGGAGGAACAAAAGAAGCATGTGAAGGTGAATGATGATTCAGATCATTTGGTGGTTGCTAGGAAATCTGAGGATTCCGTCAATGTTAATATTTCGGGGGTGTCTCCTTCTCAAGGATTGGTAGGTAGAGATTTTGATGATTCAGACGGTGATGCGGTTACTGGAATCTTAAATAGGGTGAAAAGGGGTTGGTTAAGAAGATTGAGATCGATGACGTGCATGGTTGATACGCAAGGGGAAGGTGATGATTATAATGGGAGAGGAGAAGGGAGAATGTCAGTCTCAGGGTGTAGGCTTCAGAAAGTAAAGGTCCGTCAAAGTAAGAAAAAAACCAAGGAGCTTTCATCGCTTTACTTGAGGCAAGATATCCAAGCGCACGAAGGTTCAATTTTGACAATGAAATTCAGCCCCGATGGACAGTATCTAGCCACTGGGGGAGAAGATTGTGTAGTTCGTGTGTGGCAAGTAGTTGAGGAGGATAGATGTAATGAAATTCACATTCCAGAAATTGACCCTTCATGCATTTACTTTACGGTGAATAATCTCTCTCAATTGACACCATTGTTTATGGATAAGGAAAAACTTAGCCAACTGAAGAGCCTGAGAAAAACATCAGATTCCGCTTGTGTCGTTTTCCCGCCTAAGATCTTCCGGTTGCTGGAAAAACCATTGCACGAGTTCCGTGGTCATACAAGTGAAGTTTTGGATCTATCTTGGTCAAAAAAGAATTATCTTCTCTCATCGTCAGTTGATAAAACTGTCCGACTATGGAAAGTGAATCATGAGCATTGCTTGAAAGTGTTTTCACACAGTAATTATGTGACATGTATACAATTCAATCCTGTTGATGAAGATTATTTCATTAGCGGATCCATAGACGGGAAAGTGCGCATATGGGCAATTCCTGATTGTCAGGTTGTTGATTGGACTGATGTCTTAGATATAGTGACTGCAGTATGTTATCGGCCCGATGGACAGGGAGGGATTGTTGGTTCTTTGGCAGGAAATTGTCGGTTTTATAAAATATCAGATAATCACTTGCAGTTAGATTCTCAACTATGCTTAATTGGTAAAAAGAAACTTCCTGGAAGAGGGATATTAGGCTTTAAGTTTCTTCCACAAGATTCAAACAAAGTTATGGTTACCTGTGCTGATTCACAAGTTAGAATCCTTGATGGGCTTAATGTGATTTGTAAATACAAAAGCCTCAACACAGGGAGTCCAATGTGTGCATCCTTTACTTCAGACGGGAAACATATTCTATCCGCATGCGAGGACTCAAATGTGTATCTATGGAACATTGATCAGGAAGAGTCTAATGCCACGAAATCTAAGAAAATCAGGTCTTGTGAGCGGTTTTCCTCAAATGCATCCGTTGCAGTACCTTGGCATGGTTTGAAACCTCAAATTACTGAAAATGAACAGTTGAATGTCTCGGATAAAAAATCACCTCGAGCTGCTATACAATTACACTCCACTCCTCCCGCATCTTTCTCTTTAGGCCAAGAATATTTCTTGGAGTCTTTTCCGAAGGGATCTGCTACCTGGCCCGAGGAGAAGCTTCCTGTTTCAAGCTCCAAGGCTAAAAAAACATCATTTATGCACAACTCCGAATACAAGTTCTTGAAATCTTCTTGCAAGAGCACCAACCGCGCTCACGCGTGGGGCATGGTTATCGTGACTGCAGGCTGGGACGGGAGGATAAAATCATTCCAAAATTACGGGCTACCTGTACCGGTTTGA 2163 0.4119 MGSFSGDEDCQFFDAQEDVVSIGYANSDDDNDKSVSVDFDYGVWIRSPKSVRERKGEFMKSMGMSLDGIVVENSLEVEKEEIIDRERGSSGCEEEFSSSRLLMSCCSSVSFSEELGLGDNNNLPCQDESLEKGVGTNVDKKEEQKKHVKVNDDSDHLVVARKSEDSVNVNISGVSPSQGLVGRDFDDSDGDAVTGILNRVKRGWLRRLRSMTCMVDTQGEGDDYNGRGEGRMSVSGCRLQKVKVRQSKKKTKELSSLYLRQDIQAHEGSILTMKFSPDGQYLATGGEDCVVRVWQVVEEDRCNEIHIPEIDPSCIYFTVNNLSQLTPLFMDKEKLSQLKSLRKTSDSACVVFPPKIFRLLEKPLHEFRGHTSEVLDLSWSKKNYLLSSSVDKTVRLWKVNHEHCLKVFSHSNYVTCIQFNPVDEDYFISGSIDGKVRIWAIPDCQVVDWTDVLDIVTAVCYRPDGQGGIVGSLAGNCRFYKISDNHLQLDSQLCLIGKKKLPGRGILGFKFLPQDSNKVMVTCADSQVRILDGLNVICKYKSLNTGSPMCASFTSDGKHILSACEDSNVYLWNIDQEESNATKSKKIRSCERFSSNASVAVPWHGLKPQITENEQLNVSDKKSPRAAIQLHSTPPASFSLGQEYFLESFPKGSATWPEEKLPVSSSKAKKTSFMHNSEYKFLKSSCKSTNRAHAWGMVIVTAGWDGRIKSFQNYGLPVPV 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi190g00002 720 PRINTS G protein beta WD-40 repeat signature 385 399 IPR020472 -
Vivi190g00002 720 PRINTS G protein beta WD-40 repeat signature 282 296 IPR020472 -
Vivi190g00002 720 PRINTS G protein beta WD-40 repeat signature 427 441 IPR020472 -
Vivi190g00002 720 Gene3D - 498 712 IPR015943 GO:0005515
Vivi190g00002 720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 407 439 - -
Vivi190g00002 720 SMART WD40_4 256 295 IPR001680 GO:0005515
Vivi190g00002 720 SMART WD40_4 492 532 IPR001680 GO:0005515
Vivi190g00002 720 SMART WD40_4 533 573 IPR001680 GO:0005515
Vivi190g00002 720 SMART WD40_4 401 440 IPR001680 GO:0005515
Vivi190g00002 720 SMART WD40_4 360 398 IPR001680 GO:0005515
Vivi190g00002 720 SMART WD40_4 442 481 IPR001680 GO:0005515
Vivi190g00002 720 PANTHER WD REPEAT DOMAIN 44 7 717 IPR040324 -
Vivi190g00002 720 ProSitePatterns Trp-Asp (WD) repeats signature. 560 574 IPR019775 -
Vivi190g00002 720 ProSiteProfiles Trp-Asp (WD) repeats profile. 552 582 IPR001680 GO:0005515
Vivi190g00002 720 ProSiteProfiles Trp-Asp (WD) repeats profile. 407 439 IPR001680 GO:0005515
Vivi190g00002 720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 367 400 - -
Vivi190g00002 720 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 296 IPR001680 GO:0005515
Vivi190g00002 720 Gene3D - 227 497 IPR015943 GO:0005515
Vivi190g00002 720 SUPERFAMILY WD40 repeat-like 256 711 IPR036322 GO:0005515
Vivi190g00002 720 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 263 296 - -
Vivi190g00002 720 Pfam WD domain, G-beta repeat 264 294 IPR001680 GO:0005515
Vivi190g00002 720 Pfam WD domain, G-beta repeat 362 398 IPR001680 GO:0005515
Vivi190g00002 720 Pfam WD domain, G-beta repeat 403 439 IPR001680 GO:0005515
Vivi190g00002 720 ProSiteProfiles Trp-Asp (WD) repeats profile. 367 407 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi190g00002 263 421 U-box Gene Family AT2G33340 23.529 8.71e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi190g00002 - - gmx:100817209 971.459