Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi18g00179 ATGTCTAATTTGACTTCTGCATCTGGTGAAGCTACTGCTACCGCTGCTGCAACCAATTATCCTCAACAATACTTTTCTCCATCACAATCTCAAACTCATGATGAGACTCCGGTGAAGAAAAGGAGAAACCTTCCTGGCAACCCAGACCCGGAAGCTGAAGTTATAGCGTTATCGCCGAAGACGCTTATGGCGACGAATAGATTCATTTGTGAGATCTGCAACAAAGGATTTCAAAGAGATCAGAATCTTCAACTTCATAAAAGAGGACATAATTTACCATGGAAATTGAAGCAGAGAACAGGCAATGAGATAATAAGGAAGAAAGTATATGTATGTCCAGAACCAACTTGTGTGCACCATGAGCCATCAAGAGCCTTGGGAGATTTAACTGGTATCAAGAAGCACTTTTGCAGAAAGCACGGTGAGAAAAAGTGGAAATGTGATAAGTGCTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCACTCCAAAACCTGTGGTACAAGGGAATATAGATGTGACTGTGGAACCCTCTTCACAAGGAGGGACAGTTTCATAACTCATAGAGCATTCTGTGATGCATTAGCAGAAGAGAGTTCAAGAACTGTAATTCATCAACCAAGCTCTCACAACATCATCAATCTCCAAACTCATGAGACACAAGGTTTCACATTAAAGAAAGAGCATCAAAATTTCAGTTTTCTAAAGCAAGAAATTCAAATACCATCATGGCTTGAATTAGAACAAGATCTAAACCTTCATGAAAACCCTAACCCTAGAAACGGTCCTACTACACTTCCATCATACCAACCAACATCTGCAGTTTCACCTCACATGTCAGCTACAGCATTGTTACAGAAAGCAGCTCAGATGGGTTCAACAACCAGCTCATCACAACAACAGCAACAACAATCCATGATCATGATAAGTGGGACCCACCAACATGGTCACGTGTCTCTTGATGACTCTTCCACCAACAACAACATGTTAAACTCAAATAGTAATTTTGGTTTGAATTTGTCCTCATGTGAAGACCAACACCAAATGATCAACAACTCTTTCTCTTCTTCTGGCTTTCATGGAACAACAACCACCATTGATGACGGCGGCGGCACGGTTACCGTCACCGGAGGAAATGATGCATTTACAAGAGATTTCTTAGGTTTAAGACCTTTATCTGATAGTGATATTCTGAGTATTGCTGGTATGGGAAACTGCATGGACTCTTCAAATTCCCATAATCAACAAAACCAAAGTCAAAAACCATGGCAAGGTAATTAG 1284 0.4065 MSNLTSASGEATATAAATNYPQQYFSPSQSQTHDETPVKKRRNLPGNPDPEAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKQRTGNEIIRKKVYVCPEPTCVHHEPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFTRRDSFITHRAFCDALAEESSRTVIHQPSSHNIINLQTHETQGFTLKKEHQNFSFLKQEIQIPSWLELEQDLNLHENPNPRNGPTTLPSYQPTSAVSPHMSATALLQKAAQMGSTTSSSQQQQQQSMIMISGTHQHGHVSLDDSSTNNNMLNSNSNFGLNLSSCEDQHQMINNSFSSSGFHGTTTTIDDGGGTVTVTGGNDAFTRDFLGLRPLSDSDILSIAGMGNCMDSSNSHNQQNQSQKPWQGN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi18g00179 427 Gene3D Classic Zinc Finger 104 193 - -
Vivi18g00179 427 MobiDBLite consensus disorder prediction 255 279 - -
Vivi18g00179 427 MobiDBLite consensus disorder prediction 1 52 - -
Vivi18g00179 427 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Vivi18g00179 427 Gene3D Classic Zinc Finger 64 91 - -
Vivi18g00179 427 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Vivi18g00179 427 SMART c2h2final6 145 165 IPR013087 -
Vivi18g00179 427 SMART c2h2final6 68 90 IPR013087 -
Vivi18g00179 427 SMART c2h2final6 110 140 IPR013087 -
Vivi18g00179 427 FunFam protein indeterminate-domain 12-like 47 116 - -
Vivi18g00179 427 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 410 IPR031140 -
Vivi18g00179 427 MobiDBLite consensus disorder prediction 1 33 - -
Vivi18g00179 427 MobiDBLite consensus disorder prediction 254 279 - -
Vivi18g00179 427 SUPERFAMILY beta-beta-alpha zinc fingers 67 165 IPR036236 -
Vivi18g00179 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Vivi18g00179 427 FunFam protein indeterminate-domain 5, chloroplastic-like 123 202 - -
Vivi18g00179 427 MobiDBLite consensus disorder prediction 287 306 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi18g00179 1 411 IDZ Gene Family AT1G55110 49.890 1.13e-127 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi18g00179 zf-C2H2_jaz 4.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi18g00179 K25870 - qsa:O6P43_018311 464.151