LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi18g00134	ATGAAGTGTTTATGTGAGAAAGACTCTGGTCTATGTTCTGTTCATTCAAATTCACACCGTGTTTTCGGATGCCCGTCATGGGGAACTTCTTCTGAACCCGAAGTCCAACAAGCATCCATGTCCAAAAGTTTGAGCTTCAAAATGGATGCTCTGCCACAAAAATGTCCTGACAAGAGTAAGGCACTGAGTTTTCAATTACATGAACTGGATTCATCTTCAACTCAATCGACTGACTCATCACAAACAGGTCAAATTCCTTTCCAGCATAGTTCTTCTACTGGTTCAGCATTTAAGGGAACCGAGGGGAACGATATGGGGTGTCTCATCGGCTCATCATCTATTGGGAGTCCAAATCTCACCATCCATCCTCCATTAGTGGATCCCAGCCAATCACTTGCGCATATTGCATTCCCCTTTGCTGATCCATTCTATAGTGGCCTACTTTCTGCTTCTTATGGCCATCAATATAAGCTAATGGAAACTGCTTCTGTCCGAGTTCCCCTGCCGTCTGATATGATGGAAGAACCCATATATGTGAATTCGAAGCAGTACCATGCTATACTGAGGCGAAGACAGTGTCGAGCAAAACTTGAAGCACACAACAAACTCATCAAGGATCGTAAACCATATCTTCATGAGTCACGTCATGTACATGCATTGAAGAGAGCTAGAGGTGCCGGTGGCCGCTTCCTCAATGCTAAAAAGCTCGAAGAATCAAAGCTTGCATCACAAAACCACAACCATAGCCAAAATGTTTCCACCAGCTACACTTGTTTGAATTTGAATGCGAATATGCCAGAATCTAAAATGCATGATCAGGTTGAAAACTACAGAGATGATGCTGATGCTTCAGATGTGACATATGGATCTAATAGGAATGAAATGTTACAGCAGCAACAGGAGTTAGAGTTCAGGTTATGCAGTTACCCTTCTTCTCAAACTGGAAGGAACATGCAGGATTATACAACTGACAAAAGTGTTGGTGCGAATCAACGCCACCGACTATCGGTTCTCATGTGA	1020	0.4314	MKCLCEKDSGLCSVHSNSHRVFGCPSWGTSSEPEVQQASMSKSLSFKMDALPQKCPDKSKALSFQLHELDSSSTQSTDSSQTGQIPFQHSSSTGSAFKGTEGNDMGCLIGSSSIGSPNLTIHPPLVDPSQSLAHIAFPFADPFYSGLLSASYGHQYKLMETASVRVPLPSDMMEEPIYVNSKQYHAILRRRQCRAKLEAHNKLIKDRKPYLHESRHVHALKRARGAGGRFLNAKKLEESKLASQNHNHSQNVSTSYTCLNLNANMPESKMHDQVENYRDDADASDVTYGSNRNEMLQQQQELEFRLCSYPSSQTGRNMQDYTTDKSVGANQRHRLSVLM	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi18g00134	339	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	41	294	IPR001289	GO:0003700\|GO:0006355
	Vivi18g00134	339	MobiDBLite	consensus disorder prediction	313	339	-	-
	Vivi18g00134	339	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	175	230	IPR001289	GO:0003700\|GO:0006355
	Vivi18g00134	339	SMART	cbf3	172	233	IPR001289	GO:0003700\|GO:0006355
	Vivi18g00134	339	ProSitePatterns	NF-YA/HAP2 subunit signature.	178	198	IPR018362	GO:0003677\|GO:0016602
	Vivi18g00134	339	Gene3D	-	173	234	-	-
	Vivi18g00134	339	PRINTS	CCAAT-binding transcription factor subunit B signature	207	230	IPR001289	GO:0003700\|GO:0006355
	Vivi18g00134	339	PRINTS	CCAAT-binding transcription factor subunit B signature	176	198	IPR001289	GO:0003700\|GO:0006355
	Vivi18g00134	339	MobiDBLite	consensus disorder prediction	313	330	-	-
	Vivi18g00134	339	MobiDBLite	consensus disorder prediction	70	96	-	-
	Vivi18g00134	339	ProSiteProfiles	NF-YA/HAP2 family profile.	173	233	IPR001289	GO:0003700\|GO:0006355

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi18g00134	26	245	CCAAT-HAP2 Transcription Factor Family	AT1G17590	43.723	1.03e-48	164

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Vivi18g00134		CBFB_NFYA	8e-26	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi18g00134	K08064		-	gmx:100500765	301.982