Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi18g00123 ATGGAGTACCCTTTTTATCCGAAGGGGAGAGGATTTGGGTATTGGCAGTCTCCGGGAACTGAGTTGGAAGGTTTAACATCATTAGATGGTGGAATCGGTAATTTGTCGTCAGAGGATATGCCTAGCAGTTTCTCCGAGCTCATGAACTTTGATAATTATGCTGGTTTGTATTCTGGTCCGTCCATGACTGATCAGATTATGGCTAATGAGATTCCGTCTCTTGCCTCGGTATTATATCAATCTCCGGATGGATTCAATCCAGTTGAACAGAACTGCGGGCAATTCTATATGACAGGAGTTAGTGGAAATTACAATAATTCGGATGGCTCGCCTGTTTTTGCGGAGAGAGTTGTGCGTCAGAAAATGGACACCCTACGTGGTTTCTTAGACAACAACAACAATGATGCAAATAACTTGAGTTCTAAGCAAAAAATCGATGATTCTATGCAGCATGTTAATACTTTGTCACTTGATGAAAAGATGCTGAAAGCCTTGTCGTTTTTTAAAGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCGATAAAGCATGATGGTCAAATCTTTTTAAGCACGACTGAGCAACCTTATTTACTAGATCAAATGCTGGCAGGGTATCGAGAAGTGTCGAGGACATTTATATTTTCCACAGAAGGAAAACCAGGCTGTTTACCGGGACTTCCCGGTCGTGTTTTTATCTCTAAAGTTCCTGAATGGACTTCCAATGTTGGTTATTACAATCCAAGTGAGTACTTGAGGGTTGAGCAGGCAAGAAGTCACGATGTTCGTGGATCAATTGCTTTTCCCATATTTGATCTGCAATCTGGACTGCCATGTTGTGCTGTTTTGGAACTTGTCACTACGAAGGAAAAGCTTGATTTTGACAGAGAATTGGAAATTATTTGTCGTTCACTTCAGCTTGTAAATTTAAGGACTACTATGCCTATTCGTCTGCTTCCCGAGTGTCTTTCGACCAATAAAAGAGCTGCTCTAACAGAGATAATTGATGTGTTACGATCTGTGTGTCATGCACATAGATTGCCAATGGCACTAACATGGATTCCCTGTTTTCACACTGATGGCACAAGAGAAGAAACTACTGGAATACAAATTAAAGAGGGTAATTCAAGTTCTAAAGAGAAAAGCATACTGTGTATCGAAGAGTCAGCTTGCTATATAACTGATAGAGTGATGGAAGGATTTGTGCGTGCATGCATTGAACATCCTCTCGAGGAAGGGAAAGGTGTAGCTGGGAAAGCTCTTCAATCACATCACCCTTACTTCTATTCTGACGTGAAAACATATGATATTAGTGAGTATCCGCTTGTTCATCATGCACGTAAGTTCAATTTGAATGCTGCAGTTGCAATCAGGCTAAGGAGTATTTATACTAATGATGATGATTACATATTGGAATTCTTTCTGCCTATCAATATGAAAGGGAGTTCAGAACAGCAACTTTTATTAGACAACCTCTCGGGTACCATGCAGAGAATTTGTAAGAGTTTGAGGACAGTTTCAGGTGCTGAACTATCAGGAATAGAATGTAAACATGCGGGATTTGGAAAAAAAAATGTCCCGGGTTTTTCCCCCTCGTCCATGAGAAATTCTCAGATGCCATTAATAAATGAAAACCATAGCTCTGTCCAGAAGCTGTCATCGGAGTCTTCAGACCTGAGGAACAATGGAAAAGAGCCTTCTTGTAACCAGGAAAAAAATGGATCGAGAAAGCGAAGTGAGAAAAGTAGAAGCACATCAGAGAAGAAAGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTTTGCCCGACAACTCTGAAAAGGATATGCAGGCATCACGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAACCGTTCTTTGAAGAAAATTCAGACTGTGCTTGACTCTGTTCAGGGAGTTGAAGGCGGGTTGAAGTTTGATCCTTCCATGGGGGCATTTGTGGCAGGAGGGACAACCATCCAAGAAATTGATGAAAGTAAAAATCTCCTTTTCCCGGAGAAAAGTACTACACAAGACTCTGAGCCTATTTCAGAAGATGCTGCCTCGGTGCCTCCTGCACCTTGTAGTGAAAGTGAGAATTCGGCAAATAAGTTGGATAGAAAATTGAAGGGAACCAACGCATCTATGATTGATTGCAGTGAAGATTCAAAATCATTTGCAATGCATGATTTTCCTGAACAAGCTTGTTTTAGTTCTGTTCTTGCAAAAGGCAATGATGCTATTGGCCAGAGAAGCTCCTTTGTTGCTGATGACATGGACAGTGACGCGGATGGGGATGATGAGGTTGTTGAACGCAACCATCCTACTTCTTCAAGCTTGACAGATTCATCTAGTGGCTCGGGTTCAGTCATGCATGAGAGTTCATCTAGTTACCAGAACTTTGAGAACCAGAAGAAGTCCAAAGCCAAATCAACCATCGTTGATAGTGGGACAAAAATCACCGTGAAAGCTACATACGGAGAAGACACCATTCGTTTCAAATTTGATCCATCCACAGGTTGTTTTAAACTATACGAAGAAGTTGCAACAAGATTCAAACTGCAATACGGGACATTCCAGCTCAAATATCTAGATGATGAAGAAGAATGGGTGATGTTAGTGAACGACTCGGATTTACAAGAGTGTTTAGAAATATTGAATGATATGGGGACACGGAATGCAAGGTTTCTTGTTCGTGATATGCCTTGTGTTTTAGGCAGCTCCGGCAGTAACAGTTGCTACTTGGGAGGCAGCTCATAG 2808 0.4145 MEYPFYPKGRGFGYWQSPGTELEGLTSLDGGIGNLSSEDMPSSFSELMNFDNYAGLYSGPSMTDQIMANEIPSLASVLYQSPDGFNPVEQNCGQFYMTGVSGNYNNSDGSPVFAERVVRQKMDTLRGFLDNNNNDANNLSSKQKIDDSMQHVNTLSLDEKMLKALSFFKESAGGGILAQVWVPIKHDGQIFLSTTEQPYLLDQMLAGYREVSRTFIFSTEGKPGCLPGLPGRVFISKVPEWTSNVGYYNPSEYLRVEQARSHDVRGSIAFPIFDLQSGLPCCAVLELVTTKEKLDFDRELEIICRSLQLVNLRTTMPIRLLPECLSTNKRAALTEIIDVLRSVCHAHRLPMALTWIPCFHTDGTREETTGIQIKEGNSSSKEKSILCIEESACYITDRVMEGFVRACIEHPLEEGKGVAGKALQSHHPYFYSDVKTYDISEYPLVHHARKFNLNAAVAIRLRSIYTNDDDYILEFFLPINMKGSSEQQLLLDNLSGTMQRICKSLRTVSGAELSGIECKHAGFGKKNVPGFSPSSMRNSQMPLINENHSSVQKLSSESSDLRNNGKEPSCNQEKNGSRKRSEKSRSTSEKKVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSMGAFVAGGTTIQEIDESKNLLFPEKSTTQDSEPISEDAASVPPAPCSESENSANKLDRKLKGTNASMIDCSEDSKSFAMHDFPEQACFSSVLAKGNDAIGQRSSFVADDMDSDADGDDEVVERNHPTSSSLTDSSSGSGSVMHESSSSYQNFENQKKSKAKSTIVDSGTKITVKATYGEDTIRFKFDPSTGCFKLYEEVATRFKLQYGTFQLKYLDDEEEWVMLVNDSDLQECLEILNDMGTRNARFLVRDMPCVLGSSGSNSCYLGGSS 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi18g00123 935 SUPERFAMILY CAD & PB1 domains 828 919 - -
Vivi18g00123 935 MobiDBLite consensus disorder prediction 547 590 - -
Vivi18g00123 935 MobiDBLite consensus disorder prediction 790 819 - -
Vivi18g00123 935 ProSiteProfiles RWP-RK domain profile. 571 659 IPR003035 -
Vivi18g00123 935 MobiDBLite consensus disorder prediction 772 819 - -
Vivi18g00123 935 PANTHER PROTEIN NLP8 131 927 IPR045012 GO:0003700
Vivi18g00123 935 MobiDBLite consensus disorder prediction 572 589 - -
Vivi18g00123 935 SMART PB1_new 835 917 IPR000270 GO:0005515
Vivi18g00123 935 MobiDBLite consensus disorder prediction 547 571 - -
Vivi18g00123 935 Pfam PB1 domain 836 915 IPR000270 GO:0005515
Vivi18g00123 935 CDD PB1_NLP 836 916 IPR034891 -
Vivi18g00123 935 Pfam RWP-RK domain 592 639 IPR003035 -
Vivi18g00123 935 MobiDBLite consensus disorder prediction 690 725 - -
Vivi18g00123 935 Gene3D - 831 916 - -
Vivi18g00123 935 ProSiteProfiles PB1 domain profile. 835 909 IPR000270 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi18g00123 1 932 NLP Transcription Factor Family AT2G43500 48.225 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vivi18g00123 PB1 1.2e-16 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi18g00123 - - gmx:100804426 1268.06