Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi18g00103 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCAGCAACCATGATTTGTTGTGCAGATGAAGCAGCTTTGTGTGCTAAATGTGATATTGAAGTTCATGCTGCTAACAAGCTTGCAAGCAAACATCAGAGGCTTCTTCTTCAATCTCTCTCTAACAAGCTTCCTAGATGTGACATATGCCAAGATAAGGCAGCATTCATATTCTGTGTAGAAGATAGAGCACTCTTCTGTCAAAATTGTGATGAAGCTATTCACCCGGCCGGCAGTCTTTCGGCCAACCACCAGCGCTTCCTCGCGACTGGTATCCGAGTGGCTGCTGCGAGTACTAACTGCGCGAAAGACGATGAAAAGCCTCACTTGGAACCACCAAATAGGAATCCTCAGCAAGTTTCTGTTGAACCTCCTTATCAACAAGTCCCTAACTTCTCACCCTCTTGGGGTGTTGATGACTTGCTGGAGTTAGTAGATTATGATTCCCATAACAAAAAGGAACCCATGCAATTTGGAGAAATGGAATGGTTCACTGAGGAGGGACTGTTTGGTGAAGAGTTTAATCAAGAAGCTATTTCTGCAGCTGAAGTTCCTCAGCTTCCAGTGACTCATCATGCTAGCAACAATTATTCATCACACAGAAACTCAAAGTCTAACAAAAAGCCTAGGATTGAGCTCATACGTGATTATGATTATGATGATGAGGATGAGTACTTCACAGTGCCTGATCTTGGATGA 729 0.4321 MKIQCDVCEKAPATMICCADEAALCAKCDIEVHAANKLASKHQRLLLQSLSNKLPRCDICQDKAAFIFCVEDRALFCQNCDEAIHPAGSLSANHQRFLATGIRVAAASTNCAKDDEKPHLEPPNRNPQQVSVEPPYQQVPNFSPSWGVDDLLELVDYDSHNKKEPMQFGEMEWFTEEGLFGEEFNQEAISAAEVPQLPVTHHASNNYSSHRNSKSNKKPRIELIRDYDYDDEDEYFTVPDLG 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi18g00103 242 Pfam B-box zinc finger 52 94 IPR000315 GO:0008270
Vivi18g00103 242 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Vivi18g00103 242 CDD Bbox1_BBX-like 5 47 - -
Vivi18g00103 242 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Vivi18g00103 242 MobiDBLite consensus disorder prediction 112 134 - -
Vivi18g00103 242 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 241 - -
Vivi18g00103 242 MobiDBLite consensus disorder prediction 201 221 - -
Vivi18g00103 242 SMART bboxneu5 4 47 IPR000315 GO:0008270
Vivi18g00103 242 SMART bboxneu5 52 99 IPR000315 GO:0008270
Vivi18g00103 242 Gene3D Classic Zinc Finger 1 120 - -
Vivi18g00103 242 CDD Bbox1_BBX-like 57 98 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi18g00103 1 162 Orphan Transcription Factor Family AT1G06040 63.314 4.57e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Vivi18g00103 zf-B_box 3.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi18g00103 - - vun:114183169 363.614