Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi18g00059 ATGGAGTCAGATCTTCATCAGCAGCAACAACCACAGGCCAATTCTTCAGGTTTAACTCGTTACCGATCAGCACCAAGTTCATATTTCAACAACATCATTGACAAAGAATTCTACGAGCATGTTTTCAACCGACCTTCAAGTCCAGAAACAGAGCGAGTTTTTTCAAGGTTTATGAACAGTTTGGGTTCAGAAGAAGATTTACTCGCTCAGAAAATTGCCGTTGAATCGACAGTAAAAGAAGAGGAGATTGTTAATGTTAACATTAACCAACATCACCAACAACAAGAACAGGAACAGGAACGAGAACAAGAACACATGGTTCAACATAATTATGAACACTCTCATGGTTTTTATCAAACCTCAGTGATGCCACCTTTGCCAAACCAGAATGTTGTTTCTGGTTTGGATGGAGGTTTTTCAATGGGAGTTAATAGGTTACAGCAGATGAAGAGTCATGGTGGGAATAATTCTAATCTTATTAGACATAGTAGTTCACCAGCTGGATTATTTTCTCAAATCAACATTGAAAATGGGTATGTTAGTATGAGAGGAATGGGAAATTTAGGAGCTGTTAATAGTTCTATGAAAGATGCAAAATTTTCTAGTGGAAGGAGTTTGAAGAATTCAGCAAACTATTCATCTGGGATAATGTCAACAATAGCTGAAGTTGGGGACAAATGCAATGAAGAAAATAATCAAGAAAGTGAAGTTTTTGGTGAAAGTCATCATGGCAGCGATTATATCGCGGATTATCAGGTTGATACTTGGGATGATACTGAAATGATGTCTGAAAATGTTGGTGGTTTGAAAAGATTTAGAGATAGTGATTCAAAACAACAATTTTCTGCTGGTTTTAATGCAGCTGCAGTTCAGAATGAAACAGGAGGAGGACATTCGTCTTCTCCATTGGCTCATCAGTTGAGTATGCCAAATACTTCATCTGAAATGGCAGCTATTGAGAAGTTTCTGCATTTCTCAGATTCTGTTCCGATGAAAATTCGCGCTAAGCGAGGTTGTGCTACTCATCCAAGAAGCATAGCAGAAAGGGTTAGAAGGACTAAAATTAGCGAACGTATGAGGAAGCTACAAGATCTCGTCCCAAACATGGATAAGCAAACAAATACAGCAGATATGTTAGACTTGGCTGTGGATTACATCAAAGACCTTCAAAAGCAAGCTCAGAAGCTTCAAGATTGTCAAGCAAAGTGTACTTGTTCACACAAGAAGCAACAATAA 1236 0.3819 MESDLHQQQQPQANSSGLTRYRSAPSSYFNNIIDKEFYEHVFNRPSSPETERVFSRFMNSLGSEEDLLAQKIAVESTVKEEEIVNVNINQHHQQQEQEQEREQEHMVQHNYEHSHGFYQTSVMPPLPNQNVVSGLDGGFSMGVNRLQQMKSHGGNNSNLIRHSSSPAGLFSQINIENGYVSMRGMGNLGAVNSSMKDAKFSSGRSLKNSANYSSGIMSTIAEVGDKCNEENNQESEVFGESHHGSDYIADYQVDTWDDTEMMSENVGGLKRFRDSDSKQQFSAGFNAAAVQNETGGGHSSSPLAHQLSMPNTSSEMAAIEKFLHFSDSVPMKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQKQAQKLQDCQAKCTCSHKKQQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi18g00059 411 SMART finulus 345 395 IPR011598 GO:0046983
Vivi18g00059 411 MobiDBLite consensus disorder prediction 1 21 - -
Vivi18g00059 411 FunFam Transcription factor bHLH130 family 340 409 - -
Vivi18g00059 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 401 IPR036638 GO:0046983
Vivi18g00059 411 Gene3D - 340 411 IPR036638 GO:0046983
Vivi18g00059 411 Pfam Helix-loop-helix DNA-binding domain 344 390 IPR011598 GO:0046983
Vivi18g00059 411 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 51 407 - -
Vivi18g00059 411 CDD bHLH_AtbHLH_like 344 397 IPR045239 -
Vivi18g00059 411 MobiDBLite consensus disorder prediction 291 311 - -
Vivi18g00059 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 339 389 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi18g00059 6 406 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 37.560 8.03e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi18g00059 HLH 5.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi18g00059 - - gmx:100806368 491.886