Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi18g00044 ATGAACTCAAACAACTGGCTCTCCTTTCCACTTTCTCCAACCCATCCTTCTCCATTACAACCTCAATCTCATCATCAGCATCATTTTTCTCTTGGAACATTAGTCAATGACAACATGTTGGAAACCCCTTTCCAAAACCATGATTGGAATCTGATGAATACTCTCAGTCACAGTCACCATCACAGTACTAGCAACGAAGTTCCAAAGGTTGCAGATTTTCTTGGTGTGAACAGCAAGAGTACTACTGAAAATGAGTCAGATCTTGCAGCCTTTAATGAAATCAATAATCATTCTTCAGATAACTACTTCTTCATGCCACTACAAAGCAACTCAGCTTTAGAACCAACTTCTAGCAATAGTTATGATCAATATCAAGAAAACGGTACCAATAATCTGCAGTCATTGACATTGTCAATGGGGAGTGGTACTAAAGATTCCGCATGTGAAACCAGTGGCGAAAATAATAACACTATAGTTGAAGCAGCTGCACCTAAAAGAGCTTTGGATACCTTTGGCCAAAGAACATCAATATATCGCGGTGTAACAAGACATAGATGGACCGGAAGATATGAAGCGCATCTTTGGGATAATACTTGTAGAAGAGAAGGACAATCAAGAAAAGGTCGCCAAGTCTATTTAGGTGGTTATGACAAAGAAGAAAAAGCAGCAAGAGCTTATGATTTAGCTGCACTAAAATACTGGGGAACATCCACCACAACAAACTTTCCAATCAGTAACTATGAGAAGGAAGTTGAAGAAATGAAGAACATGACAAGACAAGAATTTGTTGCATCCATAAGAAGAAAAAGCAGTGGATTTTCAAGGGGTGCGTCAATGTATCGCGGAGTCACAAGGCATCACCAACATGGAAGATGGCAAGCGAGAATCGGTCGAGTTGCAGGAAACAAAGATCTCTACTTAGGAACATTCAGTACTGAAGAAGAAGCTGCAGAAGCTTATGATATAGCTGCAATTAAGTTCAGAGGATTAAGCGCGGTAACAAACTTCGACATGAACCGGTACGAAGTGAAGGCGATTCTTGAAAGTAACACTCTTCCTATAGGAGGAGGTGCTGCAAAACGGTTGAAAGAAGCACAAGCTCTAGAATGTTCTAGAAAAAGAGAACAAGAGATGGTTGCACTTCAATATGGACTAGGATCTTCAAGTTCAAGTAGGTTAGAGTTACAAGGTTACCCTTTAATGCAATTTGAACAACAAACACAACATCATCATCAACAACAACAACAACCTTTGTTGACACTACAAAACCAGGAAGTATATCCGTCGTCGTTTCATGATCAGAGTTATTTACAAACTCAGCTTCAGTTGCATCAACAGCAACAACAAAGTGGATTTTACAACTATAATGGTGATTATAGTATTCAGAATCACCCGGGTTTGATGGAGAATAATGATGGTGGTGGAGGGTATATTGGGAATAATAATAATAGTAACAATGTTATGGGGGGAACAGCGGATTATGACATGGCTTCCGGAGGTTATGGAGGTTGGTCGGCGGGAGATTCCATGCAAGGTTCAAATGGAGGTGGTGGTGTTTTCACTATGTGGAATGGTTTGAGTAATTAA 1587 0.3995 MNSNNWLSFPLSPTHPSPLQPQSHHQHHFSLGTLVNDNMLETPFQNHDWNLMNTLSHSHHHSTSNEVPKVADFLGVNSKSTTENESDLAAFNEINNHSSDNYFFMPLQSNSALEPTSSNSYDQYQENGTNNLQSLTLSMGSGTKDSACETSGENNNTIVEAAAPKRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNTCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLSAVTNFDMNRYEVKAILESNTLPIGGGAAKRLKEAQALECSRKREQEMVALQYGLGSSSSSRLELQGYPLMQFEQQTQHHHQQQQQPLLTLQNQEVYPSSFHDQSYLQTQLQLHQQQQQSGFYNYNGDYSIQNHPGLMENNDGGGGYIGNNNNSNNVMGGTADYDMASGGYGGWSAGDSMQGSNGGGGVFTMWNGLSN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi18g00044 528 FunFam AP2-like ethylene-responsive transcription factor ANT 176 245 - -
Vivi18g00044 528 SMART rav1_2 177 249 IPR001471 GO:0003700|GO:0006355
Vivi18g00044 528 SMART rav1_2 279 343 IPR001471 GO:0003700|GO:0006355
Vivi18g00044 528 MobiDBLite consensus disorder prediction 1 27 - -
Vivi18g00044 528 CDD AP2 278 337 IPR001471 GO:0003700|GO:0006355
Vivi18g00044 528 ProSiteProfiles AP2/ERF domain profile. 177 243 IPR001471 GO:0003700|GO:0006355
Vivi18g00044 528 SUPERFAMILY DNA-binding domain 278 338 IPR016177 GO:0003677
Vivi18g00044 528 Pfam AP2 domain 280 329 IPR001471 GO:0003700|GO:0006355
Vivi18g00044 528 Pfam AP2 domain 177 235 IPR001471 GO:0003700|GO:0006355
Vivi18g00044 528 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 64 435 - -
Vivi18g00044 528 SUPERFAMILY DNA-binding domain 176 245 IPR016177 GO:0003677
Vivi18g00044 528 Gene3D AP2/ERF domain 177 245 IPR036955 GO:0003700|GO:0006355
Vivi18g00044 528 Gene3D AP2/ERF domain 279 339 IPR036955 GO:0003700|GO:0006355
Vivi18g00044 528 ProSiteProfiles AP2/ERF domain profile. 279 337 IPR001471 GO:0003700|GO:0006355
Vivi18g00044 528 CDD AP2 176 245 IPR001471 GO:0003700|GO:0006355
Vivi18g00044 528 PRINTS Ethylene responsive element binding protein signature 319 339 IPR001471 GO:0003700|GO:0006355
Vivi18g00044 528 PRINTS Ethylene responsive element binding protein signature 178 189 IPR001471 GO:0003700|GO:0006355
Vivi18g00044 528 FunFam AP2-like ethylene-responsive transcription factor 278 339 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi18g00044 1 524 AP2-EREBP Transcription Factor Family AT1G51190 60.544 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi18g00044 AP2 9.3e-13 CL0081