Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi18g00043 ATGAATACTCTCAGTCACGGTCACAATCACAATCACAGTACTAGCAACGAAGTTCCAAAGGTTGCAGATTTTCTTGGTAGTACTACTGAAAATGAGTCAGATCTTGCAGCCTTTAATGAAATCAATAATCATTCTTCAGATAACTACTTCTTCATGCCACTACAAAGCAACTCAGCTTTAGAACCAACTTCTAGCAATAGTTATGATCAATATCAAGAAAACGGTAACAATAATCTGCAGTCGTTGACATTATCAATGGGGAGTGGTACTAAAGATTCCACATGTGAAACCAGTGGCGAAAATAATAACACTATAGTTGAAGCAGCTGCACCTAAAAGAGCTTTGGATACATTTGGCCAAAGAACATCAATATACCGCGGTGTAACAAGACATAGATGGACAGGAAGATATGAAGCTCATCTTTGGGATAATACTTGTAGAAGGGAAGGACAATCAAGAAAAGGTCGCCAAGTCTATTTAGGTGGTTATGACAAAGAAGAAAAAGCAGCAAGAGCTTATGATTTAGCTGCACTAAAATACTGGGGAACATCCACCACAACAAACTTTCCAATCAGTAACTATGAGAAGGAAGTTGAAGAAATGAAGAACATGACAAGACAAGAGTTTGTAGCATCCATAAGAAGAAAAAGTAGTGGATTTTCAAGGGGTGCGTCAATGTATCGCGGAGTCACAAGGCATCACCAACACGGAAGATGGCAAGCGAGAATCGGTCGAGTCGCAGGAAACAAAGATCTCTACTTAGGAACATTCAGTACTGAAGAAGAAGCTGCAGAAGCTTATGATATAGCTGCAATTAAGTTCAGAGGATTAAGCGCGGTAACAAACTTCAACATGAATCATTACGAAGTGAAGGCGATTCTTGAAAGTAACACTCTTCCTAAAGGAGGAGGAGCTGCAAAACGGTTGAAAGAAGCACAAGCTCTAGAATGTTCTAGAAAAAGAGAACAAGAGATGGTAGCACTTCAATATGGACTAGGATCTTCAAGTTCAAGTAGGTTAGAGTTACAAGGTTACCCTTTAATGCAATTTGAACAACAAACACAACATCATCATCAACAACAACAACAACAACAACCTTTGCTGACACTGCAAAACCAGGAAGTATATCCGTCGTCGTTTCATGATCAGAGTTATTTACAAACTCAGCTTCAGTTGCATCAACAGCAACAAGGTGGATTTTACAGCTACAATGGTGATTATAGTATTCAGAATCATCCGGGTTTGATGGAGAATAATGATGGTGGTGGAGGGTATATTGGGAATAATAATAATAACAATCTTATGGGAGGAACAGCGGATTACGACATGGCTTCCGGAGGTTATGGAGGTTGGTCGGCGGGAGATTCCATGCAAGGTTCAAATGGAGGTGGTGGTGTTTTCACAATGTGGAATGGTTTGAGTAATTAA 1428 0.3971 MNTLSHGHNHNHSTSNEVPKVADFLGSTTENESDLAAFNEINNHSSDNYFFMPLQSNSALEPTSSNSYDQYQENGNNNLQSLTLSMGSGTKDSTCETSGENNNTIVEAAAPKRALDTFGQRTSIYRGVTRHRWTGRYEAHLWDNTCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLSAVTNFNMNHYEVKAILESNTLPKGGGAAKRLKEAQALECSRKREQEMVALQYGLGSSSSSRLELQGYPLMQFEQQTQHHHQQQQQQQPLLTLQNQEVYPSSFHDQSYLQTQLQLHQQQQGGFYSYNGDYSIQNHPGLMENNDGGGGYIGNNNNNNLMGGTADYDMASGGYGGWSAGDSMQGSNGGGGVFTMWNGLSN 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi18g00043 475 Pfam AP2 domain 227 276 IPR001471 GO:0003700|GO:0006355
Vivi18g00043 475 Pfam AP2 domain 124 182 IPR001471 GO:0003700|GO:0006355
Vivi18g00043 475 Gene3D AP2/ERF domain 226 286 IPR036955 GO:0003700|GO:0006355
Vivi18g00043 475 Gene3D AP2/ERF domain 124 192 IPR036955 GO:0003700|GO:0006355
Vivi18g00043 475 ProSiteProfiles AP2/ERF domain profile. 124 190 IPR001471 GO:0003700|GO:0006355
Vivi18g00043 475 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 383 - -
Vivi18g00043 475 ProSiteProfiles AP2/ERF domain profile. 226 284 IPR001471 GO:0003700|GO:0006355
Vivi18g00043 475 SUPERFAMILY DNA-binding domain 225 286 IPR016177 GO:0003677
Vivi18g00043 475 SMART rav1_2 226 290 IPR001471 GO:0003700|GO:0006355
Vivi18g00043 475 SMART rav1_2 124 196 IPR001471 GO:0003700|GO:0006355
Vivi18g00043 475 CDD AP2 123 192 IPR001471 GO:0003700|GO:0006355
Vivi18g00043 475 CDD AP2 225 283 IPR001471 GO:0003700|GO:0006355
Vivi18g00043 475 FunFam AP2-like ethylene-responsive transcription factor ANT 123 192 - -
Vivi18g00043 475 PRINTS Ethylene responsive element binding protein signature 266 286 IPR001471 GO:0003700|GO:0006355
Vivi18g00043 475 PRINTS Ethylene responsive element binding protein signature 125 136 IPR001471 GO:0003700|GO:0006355
Vivi18g00043 475 FunFam AP2-like ethylene-responsive transcription factor 225 286 - -
Vivi18g00043 475 SUPERFAMILY DNA-binding domain 123 192 IPR016177 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi18g00043 18 471 AP2-EREBP Transcription Factor Family AT1G51190 61.583 0.0 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vivi18g00043 AP2 8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi18g00043 K09285 - gmx:100788471 566.229