Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi18g00039 ATGAATTCTCAACCCTACTTCTCCAACAACTTCAATGGTTATTATTTTGACCTAAATAGCCCTCCATTCTATAATTTCCCATCTAGTTTCCATCAAAACAACATATCTTTCTCATCTCCATCTCCACCACCTCCAAGAGAAGCTCTTCCTTTACTTAACCTAAACCTAAACCCTACAAAACATGAAGATCTTCTTGAATCTTCCTTTTCTTCCATGGAAATGATGAACATGAAAGAGAAAGAACAACTAAGTATATCATCAAACTCTCTAGATGATGTTGATGATGATGTTACTGTTGCTTTACATCTAGGGCTTCCAAGTATAGCTTCATCTGATTTGGCTTCTGAGAAAGAAGATGATGATGAAAAAGTTGTAACTGTTGCTTCTGAGTGTCCACCAAGTAAAATTAATAGGGGTCAGTATTGGATCCCTACCCCTGCTCAGATTCTTATTGGCCCTACACAGTTTTCATGTCCTCTTTGTTTCAAAACCTTCAACAGATACAATAACATGCAGATGCACATGTGGGGACATGGATCACAATATAGAAAAGGACCAGAATCTCTAAGAGGAACACAACCAACAGCCATGTTAAGACTCCCATGTTATTGTTGTGCCACAGATTGCAAGAACAACATAGACCATCCAAGAGCAAAGCCACTAAAAGATTTCAGAACACTTCAAACACATTACAAGAGAAAGCATGGAATAAAACCCTTCATGTGTAGAAAGTGTTGCAAAGCATTTGCAGTGAGAGGAGATTGGAGAACTCATGAGAAAAACTGTGGCAAGCTTTGGTATTGTTGTTGTGGGTCAGATTTTAAGCACAAAAGGTCACTTAAAGATCATATAAAGGCATTTGGAAATGGACATAAAGCTTATGGGATTGATGATCAAGATGGGTCTGAAATTGAGCAAGAAAATGAATCTTTTCAGTCATAG 942 0.3769 MNSQPYFSNNFNGYYFDLNSPPFYNFPSSFHQNNISFSSPSPPPPREALPLLNLNLNPTKHEDLLESSFSSMEMMNMKEKEQLSISSNSLDDVDDDVTVALHLGLPSIASSDLASEKEDDDEKVVTVASECPPSKINRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCATDCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIKAFGNGHKAYGIDDQDGSEIEQENESFQS 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi18g00039 313 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Vivi18g00039 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Vivi18g00039 313 PANTHER ZINC FINGER PROTEIN WIP2 29 307 IPR043584 GO:0003700|GO:0010468
Vivi18g00039 313 SUPERFAMILY beta-beta-alpha zinc fingers 222 260 IPR036236 -
Vivi18g00039 313 FunFam Zinc finger protein WIP2 209 291 - -
Vivi18g00039 313 Gene3D Classic Zinc Finger 155 178 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi18g00039 97 313 C2H2 Transcription Factor Family AT3G57670 68.966 3.17e-126 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi18g00039 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi18g00039 - - vum:124825208 433.721