Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi18g00026 ATGGCAACAACCTATCACCAACCCACCACAATAGAAGAAGTCCGAACCCTATGGATAGGCGATTTACAATACTGGGTCGACGAAAACTACCTCACAAACTGTTTCTCCCACACCGGCGAAGTCATCTCCATCAAAATCATCCGCAACAAAATCACCGGCCAACCAGAAGGCTACGGTTTCGTCGAATTCGTCTCCCACGCCGCCGCGGAACGGGTTCTTCAAAGCTACAACGGAACTCAAATGCCGGGAACCGAGCAAACGTTCCGGTTGAACTGGGCTTCGTTCGGTATCGGTGAGCGCCGTCCGGATGCCGGTCCCGATCACTCGATTTTCGTTGGGGATCTTGCTCCGGATGTTACTGATTATCTTTTGCAAGAGACTTTTAGGACTCATTATAGTTCGGTTCGCGGTGCGAAGGTTGTGACGGATCCGAATACGGGAAGGTCTAAGGGTTATGGTTTTGTTAAATTTGCTGATGAGAGTGAGAGGAATCGGGCTATGTCTGAAATGAATGGGGTTTATTGTTCTACTAGGCCGATGAGAATTAGTGCTGCTACGCCGAAGAAAACTACGGCTTATCCGCAGAATCCTTATGCTGCTGTTGGTGCTGCTGTTGTTGCTCCTGCACCTGCTCCTAAAGCAACATATCCAGTTCCAGCATACACCGCCCCAGTGAATACAGTTCCACCAGAATATGATGCAAACAATACTACCGTTTATGTTGGTAATTTGGATCTTAATGTCTCAGACGAGGAGCTAAAGCAACACTTTCTGCAATTTGGAGAGGTTGTTTCTGTCAAAGTACATCCCGGCAAAGCATGTGGTTTTGTTCAATTTGGGGCTAGAGCATCTGCTGAAGAAGCCATTCAGAAGATGCAGGGAAAGATAATAGGTCAACAAGTGATCCGAGTTTCTTGGGGTAGGCCCCTAACAGCTAGACAGGACATACCTGGTGGCTGGGGACAACAGGTGGATCAAAGTCAATGGAGTGCATACTATGGGTATGGACAGCAGGGTTATGAAGCTTATGCATATGGGGCTGCTCAGGATCCTTCAATGTATGCATATGCTGGATATGCTGGCTATGCACAATATCCCCAACAGGTTGAAGGTGTCCAAGACGTAACAGCTATGTCTGTGCCTACCATGGAACAAAGGGAGGAGTTGTATGATCCTCTGGCAGTGCCCGATGTTGATAAGTTAAATGCTGCATATCTCTCGATACACGGAAATGCCATTTTAGGGCGGTCTCTCTGGCACAAAACCTCATCCTTGCCGCAAGCTTAG 1287 0.4794 MATTYHQPTTIEEVRTLWIGDLQYWVDENYLTNCFSHTGEVISIKIIRNKITGQPEGYGFVEFVSHAAAERVLQSYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYSSVRGAKVVTDPNTGRSKGYGFVKFADESERNRAMSEMNGVYCSTRPMRISAATPKKTTAYPQNPYAAVGAAVVAPAPAPKATYPVPAYTAPVNTVPPEYDANNTTVYVGNLDLNVSDEELKQHFLQFGEVVSVKVHPGKACGFVQFGARASAEEAIQKMQGKIIGQQVIRVSWGRPLTARQDIPGGWGQQVDQSQWSAYYGYGQQGYEAYAYGAAQDPSMYAYAGYAGYAQYPQQVEGVQDVTAMSVPTMEQREELYDPLAVPDVDKLNAAYLSIHGNAILGRSLWHKTSSLPQA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi18g00026 428 SUPERFAMILY RNA-binding domain, RBD 101 198 IPR035979 GO:0003676
Vivi18g00026 428 CDD RRM2_SECp43_like 107 186 - -
Vivi18g00026 428 Gene3D - 223 314 IPR012677 -
Vivi18g00026 428 Gene3D - 14 94 IPR012677 -
Vivi18g00026 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 187 IPR000504 GO:0003723
Vivi18g00026 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 239 303 IPR000504 GO:0003723
Vivi18g00026 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 175 IPR000504 GO:0003723
Vivi18g00026 428 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 85 IPR000504 GO:0003723
Vivi18g00026 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 237 309 IPR000504 GO:0003723
Vivi18g00026 428 Gene3D - 97 196 IPR012677 -
Vivi18g00026 428 SUPERFAMILY RNA-binding domain, RBD 218 337 IPR035979 GO:0003676
Vivi18g00026 428 FunFam polyadenylate-binding protein RBP45 220 316 - -
Vivi18g00026 428 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 95 IPR000504 GO:0003723
Vivi18g00026 428 FunFam Polyadenylate-binding protein RBP47B 14 94 - -
Vivi18g00026 428 CDD RRM1_SECp43_like 16 96 - -
Vivi18g00026 428 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 8 312 - -
Vivi18g00026 428 FunFam Polyadenylate-binding protein RBP47B 96 198 - -
Vivi18g00026 428 SMART rrm1_1 109 183 IPR000504 GO:0003723
Vivi18g00026 428 SMART rrm1_1 238 305 IPR000504 GO:0003723
Vivi18g00026 428 SMART rrm1_1 16 91 IPR000504 GO:0003723
Vivi18g00026 428 SUPERFAMILY RNA-binding domain, RBD 6 83 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi18g00026 16 315 Eukaryotic Initiation Factors Gene Family AT1G71770 25.574 9.56e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi18g00026 - - tpra:123894020 762.296