Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi18g00007 ATGCATCCCTTAACTCTCCCTAAAATGTTGCTTTCTCTTTCTCCAATTTACCGATTTCTTCAACCATCTTCATGCCTCCATTACCAAACCCAAACCACTTGTTCAATTTCCATACCTAGATGCAGAATCAACCCTAGAATCTTCACAAATAGAAATCAGCATGGGAGTAAGGGAAGAGGTAGCAATAGAATAACTGTAATTGTAAAAGCAAGGCGCAGCGAGTCTCCATATGAGGTTCTGGGATTGTCTCCTTCCGCGTCTGTGGCTGAAATCAAGAAAGCGTATCGGAAACTCGCTCTCAAGTATCATCCTGATGTTAACAAAGAGAAGAATGCACAGGAGAAATTTTTGAGGATAAAACATGCATACAATACATTGCTAAATTCTCCACGCAGAAAGTATGATTCGGGAAATCGTGGTTCTAATTCTTCTCAAAGAAGTCAAAGTCGGAATCCACAAGCTGAAGAAGAGTTTTATGGATTAGGTAATTTTTTGAGAGATGTTGAAATAACAATAGGAGACTTCTTTAAGGATCTTCAAGAAGAATTCAAGAACTGGGAAGCCAGTGCGGCTTCACAAGGAAAACCAAAGAGTCTATGGGAGGAATTGTCGGAAATAGGAGAAGAGTTTGTGGAGTTCCTTGAGAAAGAACTCAATATAGTTGATCCAAATGACAATCCTCAAGAAGGAAATCCATCTAATTTATATGGCACAGAGACACCAAACAACAGGACTCAAGGGGAAGCTCGCAAGGAAAACAAAAGCGTTGAGGATAACCTTGATGAAGTAGAAGCTGCTCTTGCTCAGTTAAAAAAGGAGTTAGGTTTATAG 831 0.3971 MHPLTLPKMLLSLSPIYRFLQPSSCLHYQTQTTCSISIPRCRINPRIFTNRNQHGSKGRGSNRITVIVKARRSESPYEVLGLSPSASVAEIKKAYRKLALKYHPDVNKEKNAQEKFLRIKHAYNTLLNSPRRKYDSGNRGSNSSQRSQSRNPQAEEEFYGLGNFLRDVEITIGDFFKDLQEEFKNWEASAASQGKPKSLWEELSEIGEEFVEFLEKELNIVDPNDNPQEGNPSNLYGTETPNNRTQGEARKENKSVEDNLDEVEAALAQLKKELGL 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi18g00007 276 SMART dnaj_3 74 131 IPR001623 -
Vivi18g00007 276 Gene3D DnaJ domain 72 193 IPR036869 -
Vivi18g00007 276 ProSiteProfiles dnaJ domain profile. 75 138 IPR001623 -
Vivi18g00007 276 MobiDBLite consensus disorder prediction 224 244 - -
Vivi18g00007 276 Coils Coil 246 273 - -
Vivi18g00007 276 MobiDBLite consensus disorder prediction 129 155 - -
Vivi18g00007 276 MobiDBLite consensus disorder prediction 221 260 - -
Vivi18g00007 276 Pfam DnaJ domain 76 135 IPR001623 -
Vivi18g00007 276 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 37 215 - -
Vivi18g00007 276 SUPERFAMILY Chaperone J-domain 22 133 IPR036869 -
Vivi18g00007 276 PRINTS DnaJ domain signature 77 95 IPR001623 -
Vivi18g00007 276 PRINTS DnaJ domain signature 95 110 IPR001623 -
Vivi18g00007 276 PRINTS DnaJ domain signature 111 131 IPR001623 -
Vivi18g00007 276 MobiDBLite consensus disorder prediction 245 260 - -
Vivi18g00007 276 MobiDBLite consensus disorder prediction 129 154 - -
Vivi18g00007 276 CDD DnaJ 76 128 IPR001623 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi18g00007 77 136 C2H2 Transcription Factor Family AT1G74250 41.791 6.55e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi18g00007 - - gmx:100812972 330.102