Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1888g00097 ATGGAAGACAAAGACAGAGCACCTCCCGATCCCGCAACCACCGGAGAGTTTATCGGCAACTCGAGCTGGTCTCTAGGCGTCGATGATTCCGATGGAAGTCATTTCTTCTCCGGCGATAGAGATGGAACCATGTTCGGTGACATCGGCTGGGATCTTGTACCGGACAGAATCGGAGCCAGTGAGGAATCGTTGCCGCCGGTTCAAACCGGTTCGATCGAGACAGCAGCGACGTCGTCTTACAGGTCTAATAATCAATCCGTTTCTTCAAGCTCCAGTGAGGATCCGCCGGAGAAATCTACCGTCTCTGACGAAAAACCGCCGGAAATACCGAGTAAAAGTAAAAAGAAAGGGCAAAAGCGAATACGGCAGCCGCGGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTCGAGGATGGTTACAGATGGCGAAAGTATGGTCAGAAAGCAGTTAAAAATAGCCCATTTCCTAGAAGCTATTATAGATGCACAAATAGTAAATGCACGGTGAAGAAAAGGGTTGAACGCTCTTGTGAAGACCCAACTATTGTTGTAACAACATATGAAGGCCAACACTGTCATCACACAGTTGGATTTCCTCGAGGTGGAATCATTAGTCATGATGCTTCCTTTACAGGCCAATTTGCTCCAACAATGCCTCAATTCTATTATCCTATTCAAATACCTACAGAATCAAACACTTGCACCACTACTGTTTCTCAACCTAGCCAACCACATGATGATCATGAAGCTGGAAGATCGAGCAGCGCTACAATGGCTTTGTCTGATGCATCGCTGCCACAGCATCCAACGGATGAAGGACTACTTGGAGATATTGTACCCCGTGGAATGCGCAGCAGGAAAGAGAGAAATATTTGA 879 0.4664 MEDKDRAPPDPATTGEFIGNSSWSLGVDDSDGSHFFSGDRDGTMFGDIGWDLVPDRIGASEESLPPVQTGSIETAATSSYRSNNQSVSSSSSEDPPEKSTVSDEKPPEIPSKSKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSCEDPTIVVTTYEGQHCHHTVGFPRGGIISHDASFTGQFAPTMPQFYYPIQIPTESNTCTTTVSQPSQPHDDHEAGRSSSATMALSDASLPQHPTDEGLLGDIVPRGMRSRKERNI 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1888g00097 292 ProSiteProfiles WRKY domain profile. 132 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1888g00097 292 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 82 238 IPR044810 GO:0003700
Vivi1888g00097 292 MobiDBLite consensus disorder prediction 234 292 - -
Vivi1888g00097 292 MobiDBLite consensus disorder prediction 57 126 - -
Vivi1888g00097 292 SMART WRKY_cls 137 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1888g00097 292 Pfam WRKY DNA -binding domain 138 194 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi1888g00097 292 MobiDBLite consensus disorder prediction 64 96 - -
Vivi1888g00097 292 Gene3D WRKY domain 124 190 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi1888g00097 292 MobiDBLite consensus disorder prediction 1 41 - -
Vivi1888g00097 292 MobiDBLite consensus disorder prediction 97 114 - -
Vivi1888g00097 292 FunFam WRKY transcription factor 57 123 197 - -
Vivi1888g00097 292 SUPERFAMILY WRKY DNA-binding domain 129 195 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1888g00097 20 286 WRKY Transcription Factor Family AT1G69310 48.621 4.43e-75 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi1888g00097 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1888g00097 - - gmx:100170676 379.022