Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1888g00093 ATGGAAGAGAAGAAGTTTGAGTGTAGGTATTGTTTACGAAAGTTTCTTTGTGGTAAGTCTCTTGGTGGTCACATAAGGACTCATATGATGAGTGAGAATGAAGAGAGAAGAATAATGAATGCTAATGCTGCTGCTGCTAACACTGTGTTTAAGTTTGATGATGGAAGAAAGAGAAAGAGATCTGAATTAGGGTCTAGTAGTGTTGGTGGTGACGATGGAAACTACATTTATGGTCTTAGAGAGAATCCCAAGAAAACAACTAGGTTTGTGCATTCCAATGCTGCTGCTGCTACTACTGTTCAGAATGAAAGATTCTGCAAGGATTGTGGAAAAGGTTTTTTCTCGTTGAAAGCTTTGTGCGGGCACATGGCTTCTCATTCAGAGAAAGGTGTCGTGTCTGGTGTCGGTGTAAGGGATAGTCAGTCGGATACCGAGGATTCGGTTCCGACTGATACCAGGAAGTCAAAGAGAATGAAGCTCAAGATTATTAGTAATGAAAATCGGCCGTCTTCGTCTTCGCCTCCGTGGGGAAACTGTTCTTCTTCGATTTCGGAGGTTGATCAAGATCATGAAGAAGTTGCCAGGACTTTGATGATGTTGTCTAGAGATTATTCTTTCAAGGGTAGGTTTGCTTTGAGGACAGACTCTTCTGAGAACAACTCTGCTGTTGTTGAGCCCGAAGCGAAATTGAAATTGAAATTGAAATCGAAAATGGTTGATACTAAGGTTGTTGGAACTGGGATGATCAAGGTGAATGGTATGACGATGAAGTATTATGGAGAAGGTTATGATTCTGATAACTCTGATTCTGGTTATTTTCTGCACGGTCCTAAAAAGGTAGAATCTGATGATGCTTCAAGCGAGTGGTGTTTAAGGAACCGATTTCAAGATCATGATTTTGCATCAAGTAAGAAGATACAGAGCAATAAGAACAACGGTTATGGTAACGATGAGATGTATTCGGGTTTGAAGAATGTAAGAGAGAGTTATTCAGATGAATCGGTTTATGAGAGTGATGAAAACAGCACTGATAGTGATTCATATACTGCTCCAAAGGCACAAGCCAACAAGAGCAACATGAATGGAGCAAAGAGTGGTAATTACAAGAAGTCAAGTAGCAAAGGGAAGAAGAAAGTGAAGTCAAAGAAAAACAAAGAACATGATTGTCCACTTTGCCCCAGGACTTTCAAGTCAGGACAAGCTTTAGGAGGTCACAAAAGATCACATTTTGTTGGTGGAGGGTATGATGAGAGCACTCTTGTCATTAGACCAGGTGCTCAAGCTCTTGCTCCAGCAAGAGCTCTGGCGCCGGTGCGGGCACCGGCGCCAGCTCCTGCGGCTGTTAATGCTTGCTTGATTGATCTTAACCTGCCTGCTCCTGATGATGAATAG 1392 0.421 MEEKKFECRYCLRKFLCGKSLGGHIRTHMMSENEERRIMNANAAAANTVFKFDDGRKRKRSELGSSSVGGDDGNYIYGLRENPKKTTRFVHSNAAAATTVQNERFCKDCGKGFFSLKALCGHMASHSEKGVVSGVGVRDSQSDTEDSVPTDTRKSKRMKLKIISNENRPSSSSPPWGNCSSSISEVDQDHEEVARTLMMLSRDYSFKGRFALRTDSSENNSAVVEPEAKLKLKLKSKMVDTKVVGTGMIKVNGMTMKYYGEGYDSDNSDSGYFLHGPKKVESDDASSEWCLRNRFQDHDFASSKKIQSNKNNGYGNDEMYSGLKNVRESYSDESVYESDENSTDSDSYTAPKAQANKSNMNGAKSGNYKKSSSKGKKKVKSKKNKEHDCPLCPRTFKSGQALGGHKRSHFVGGGYDESTLVIRPGAQALAPARALAPVRAPAPAPAAVNACLIDLNLPAPDDE 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1888g00093 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 387 409 IPR013087 -
Vivi1888g00093 463 MobiDBLite consensus disorder prediction 164 184 - -
Vivi1888g00093 463 ProSitePatterns Zinc finger C2H2 type domain signature. 389 409 IPR013087 -
Vivi1888g00093 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Vivi1888g00093 463 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Vivi1888g00093 463 MobiDBLite consensus disorder prediction 132 187 - -
Vivi1888g00093 463 SUPERFAMILY beta-beta-alpha zinc fingers 2 31 IPR036236 -
Vivi1888g00093 463 SMART c2h2final6 387 409 IPR013087 -
Vivi1888g00093 463 SMART c2h2final6 104 126 IPR013087 -
Vivi1888g00093 463 SMART c2h2final6 6 28 IPR013087 -
Vivi1888g00093 463 MobiDBLite consensus disorder prediction 144 163 - -
Vivi1888g00093 463 SUPERFAMILY beta-beta-alpha zinc fingers 105 409 IPR036236 -
Vivi1888g00093 463 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vivi1888g00093 463 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 463 - -
Vivi1888g00093 463 MobiDBLite consensus disorder prediction 330 391 - -
Vivi1888g00093 463 MobiDBLite consensus disorder prediction 341 369 - -
Vivi1888g00093 463 Pfam C2H2-type zinc finger 6 29 - -
Vivi1888g00093 463 Pfam C2H2-type zinc finger 106 128 - -
Vivi1888g00093 463 Pfam C2H2-type zinc finger 387 409 - -
Vivi1888g00093 463 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1888g00093 1 463 C2H2 Transcription Factor Family AT1G26610 37.403 8.42e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1888g00093 zf-C2H2_6 0.00076 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1888g00093 - - psat:127119641 602.438