Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1887g00075 ATGGAATTGGAAGGTGATCATCAAAGCAATGGAATCCGAAGCAGACCAAATTTCCCTCTTCAGCTTTTAGAGAAAAACAACATCATCGAACATGTCTCCGAAGAACAACCTTGTTCAACCACCACCGCAAACGACGGTTCGACTGCCATCGTATCATCAGAGCAACAGAAAAAGCCACCGCCGAAGCGAGCCTCGACGAAAGATCGGCACACGAAGGTCGACGGACGAGGCCGGCGGATCCGTATGCCGGCTGCCTGTGCCGCGAGGGTGTTCCAGCTCACGCGTGAGCTGGGACACAAATCCGACGGCGAGACGATTGAGTGGCTACTTCAACAGGCTGAACCGTCGGTTATAGCGGCCACCGGAACAGGAACAATCCCTGCGAATTTCACGTCGCTGAATATCTCTCTAAGAAGCTCTGGTTCAACTATGTCCGCTCCGTCGCACTATTTTAGAGGTAATTACTTCAACCCTAGTTCGTTTTCGACGGCCGCCGCGGCGGCTCAGCTTCGAAACCGCGCTGAATGGGATAGAACTATGAATATGAATGTTGTGGCTGAAGATTCTAGAAGAACTAATAGTATGTTAGAGAATCCTTCTTCTTTATCAGCGATTTTGAATTTCAACAACGTGCAAAATGCTATTCTTCAAGCTAAACAAGAGCTCCGGGATGAAAACACTGCCTCCGGCGCCGCTGGCGGCGGCGGAGGATTTGAATTGTTGGGTTCTGATTCTGATGGAAGCATAGGGAGAAAAAGAAGGTCATCAGAGCAAGAATTGTTATCACAAAATATGGGGAGCTATTTATTACAATCAAATGTGGGGTCACTTCCTTCAAGCCATGCTTCCAACACGGCAGCGTTTTGGATGGTAACTGGGAATGGGAACCAAACTGTTAATGGTGGTGGTAGTGGTAATGGAAATGATCCAATTTGGGCTATTCCTTCTGTTGGAAATAATGGCTTATATAGAGGAGCTATGTCTATGTCTTCTCCTAATGGAATTCATTTCATGAATTTTGCTTCTCCAATGAATCTGATGCCCGGAAGTCAATTCGGTTCTGGAGTCATCGGCGGTGGTGGAGGCAGCGGTGGTGGTATTCTCGGCGAAAGCAATTTAAATATGCTTTCAGCCATGAATGCCTATAGGCAGATTTCTGCAAATGGTATGTCCGAGTCGTCCGGACATCACCACGGCGGAGGTGGAGGAGTAGGAGGAGGAGATGACGACGGACATGACTCAAGCAGTCAACACTCTTAA 1260 0.481 MELEGDHQSNGIRSRPNFPLQLLEKNNIIEHVSEEQPCSTTTANDGSTAIVSSEQQKKPPPKRASTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGNYFNPSSFSTAAAAAQLRNRAEWDRTMNMNVVAEDSRRTNSMLENPSSLSAILNFNNVQNAILQAKQELRDENTASGAAGGGGGFELLGSDSDGSIGRKRRSSEQELLSQNMGSYLLQSNVGSLPSSHASNTAAFWMVTGNGNQTVNGGGSGNGNDPIWAIPSVGNNGLYRGAMSMSSPNGIHFMNFASPMNLMPGSQFGSGVIGGGGGSGGGILGESNLNMLSAMNAYRQISANGMSESSGHHHGGGGGVGGGDDDGHDSSSQHS 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1887g00075 419 MobiDBLite consensus disorder prediction 34 74 - -
Vivi1887g00075 419 MobiDBLite consensus disorder prediction 389 419 - -
Vivi1887g00075 419 Coils Coil 208 228 - -
Vivi1887g00075 419 MobiDBLite consensus disorder prediction 226 260 - -
Vivi1887g00075 419 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 38 376 IPR005333 GO:0003700
Vivi1887g00075 419 ProSiteProfiles TCP domain profile. 66 120 IPR017887 -
Vivi1887g00075 419 MobiDBLite consensus disorder prediction 60 74 - -
Vivi1887g00075 419 Pfam TCP family transcription factor 65 203 IPR017887 -
Vivi1887g00075 419 MobiDBLite consensus disorder prediction 34 59 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1887g00075 48 410 TCP Transcription Factor Family AT3G47620 41.330 6.24e-54 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi1887g00075 TCP 3.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1887g00075 - - gmx:100809966 487.648