Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1887g00054 ATGGAAGAGACAAATGATGTTGAAAAAGTTGATGAAGTTATATTACCAGGGTTTAGGTTTCATCCAACAGATGAAGAGCTAGTTGGTTTTTACCTAAAGAGAAAAGTTCAACAAAGGCCTCTATCTATTGAGCTCATCAAGCAGCTTGATATCTATAAATATGATCCATGGGATCTTCCAAAATTTGCTAGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGAAACAGTGCAAGGCCAAATAGGGTAACTGGAGCTGGATTCTGGAAAGCTACAGGTACTGATAGACCTATCTATTCCTCTGAAGGTTCTAAGTGCATTGGTTTGAAGAAATCATTAGTCTTTTACAAAGGTAGAGCTGCTAAAGGACTCAAAACGGATTGGATGATGCATGAGTTTAGGTTACCTTCTCTCGTAGATCCGCTTTCATCGAAGAAGTACTTCGACAAAACCATTCCCGCTAATGAATCTTGGGCTATATGCAGAATATTCAAGAAAACAAATTCTACAACTCAAAGAGCTTTATCTCACTCTTGGGTTTCTCCTCTTTCTGAAACAAGAGCCTCTATGCTAACCAAAAATCAAGAAATCAACCAATTTTGTTCAGACAACATGTCACAAACAAAGAAAGAAACCTTAGCAAACAACTTCATCACTAACAACAATGGTAATAGCCAACAAAACTTTGATGTTGATGTTGATGTTGATCTTACCTCTTATAAATCCATAATTAATCATCACTTACCCAATATTTCAAATGAATATCTTAACACAAACTTGATATTCTCGCCATCTCAACTACAAACATGTGACAACACTTCCAAATCTACAATGGATGATGTTTCATCAATGTTGTTGAACATGTCATCATCATCATCCTCAATGCTTGGTGACTTTAGCAAGACAAGTGATGAGGTTACAACTACAAATTTCAACTATGGCTTGCAAGAGCAATTTAGTGACTACTCAATGCAATTGCAAAGTACATTTGATAACCAATATGATAATAATGCATTGGTAAAGGCTCCTTATTACAATGAACAAGAATTGATGCATTTCAATATTGGTGATGCATGGAAGTCAAATTTGCTTTGGGATACTTCATTTTGTCCTTGTGATGTTCCCTCTAGTTATTATTCTACAACAACCAAGTGTTACACTTAA 1182 0.357 MEETNDVEKVDEVILPGFRFHPTDEELVGFYLKRKVQQRPLSIELIKQLDIYKYDPWDLPKFASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGLKTDWMMHEFRLPSLVDPLSSKKYFDKTIPANESWAICRIFKKTNSTTQRALSHSWVSPLSETRASMLTKNQEINQFCSDNMSQTKKETLANNFITNNNGNSQQNFDVDVDVDLTSYKSIINHHLPNISNEYLNTNLIFSPSQLQTCDNTSKSTMDDVSSMLLNMSSSSSSMLGDFSKTSDEVTTTNFNYGLQEQFSDYSMQLQSTFDNQYDNNALVKAPYYNEQELMHFNIGDAWKSNLLWDTSFCPCDVPSSYYSTTTKCYT 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1887g00054 393 Pfam No apical meristem (NAM) protein 16 141 IPR003441 GO:0003677|GO:0006355
Vivi1887g00054 393 FunFam NAC domain-containing protein 35 23 175 - -
Vivi1887g00054 393 SUPERFAMILY NAC domain 12 172 IPR036093 GO:0003677|GO:0006355
Vivi1887g00054 393 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Vivi1887g00054 393 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Vivi1887g00054 393 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 271 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1887g00054 8 310 NAC Transcription Factor Family AT1G26870 57.778 1.61e-111 331
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1887g00054 NAM 3.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1887g00054 - - gmx:100783995 479.559