Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1887g00053 ATGGCTACCATGAAAGACTTAAAACCTTGGCCACCCTCTTCCTTTACCAATGAGTGGGTTTACGACGTTTTCCTCAGTTTTCGAGGAGAGGATACTCGAAAAGGTTTTACCGGAAACCTTTATAACGCTCTTTGTAGAAAAGGAATCAACACTTTCATAGATGACCAAGGGCTTAGGAAAGGAGAAGAAATCACACTAGCTCTTAGCATGGCAATTCAACAATCAAGAATTGCAATTGTGATTTTTTCAAAAAACTATGCATCATCCACTTTCTGTTTGGAAGAGCTTACAAAGATTATGGAGTGCATCAAACATAAGGGCAGGTTGGTTTGGCCGGTTTTTTATCAAGTTGACCCTTCTGATGTGCGCCATCAGACAGGGAGCTATGCAAAAGCACTGGCCAACCATGACAGAAAAAAATCCACTGACAAGGCAAAGGTCAAACAGTGGAGGTTAGCTTTGCGAGAAGCGGGTAATGTGGTAGGTTCGCATTTCAAAGACGGGTACGAATATAAGTTCATTGAGAAGATCATTCAAGAGGTCTCTGAAAAGATTAACCGTAAACCATTACATGTTGCTAAATACCCTGTTGGGTTAGAGTCTCGGGTGCAAAAAGTGAACTCGCTTCTAGAGATTGAATCAAAAGAGGGGATTCACATGGTGGGAGTTTACGGAATGGGTGGAATGGGTAAAACAACACTTGCATGTGCTGTATACAATTACATTGCAGATCAATTTGATAGTCTTTGTTTTCTTGGTGATATTAGAGAAAATTCAGTGAAGCGTGGGTTGGTACAACTACAGGAGATGCTTCTTCTTGAATTAGCTGGGGAGAAAGATGTTAAGTTGTGCAGTTTAAATAAAGGAATTTCTATCATCAAAAGTAGGCTTCGTGGGAAAAAAACTCTATTGATTTTGGATGATGTTGACAGTTTGGAGCAACTAAATGCACTTGCGGGTGGACTTGATTGGTTTGGTTCTGGCAGCAGAGTTATTATCACAACAAGAGATAAGCATCTACTAGATGTTTATGGTGTTGAAAAACTCTACGAAGTAGAAGGATTGAATCGTCAAGAAGCCCTTCAGTTGTTTGGTTGGAATGCTTTCAAAACTCAGGAAATTGATCCAAGATATGTGGACATTTCAAAGAGAGTAGTACTTTATACTAAGGGCCTTCCATTGGCTGTAGAAATAATAGGCTCTGACTTGTATGGTAAAACAAAATTGGAGTGGAAATCTGCTTTAGATACTTACGAAAAAATTCCTCATGAAAATATTCAAGAAATCTTACGAGTAAGCTACGATGGCTTAAAAGAATTTGAGAAGGAAGTATTTTTAGACATCGCTTGCTTCTTCAAAGGAGGCAAATTAAGTGATGTCATGAACATACTATCTAGTGGTCGTGGCTTTGACCCTCACTATGCTATTCAGGTGTTGATTGATAAGAGTCTGGTAAAAGTTGATGATTATCGTGTCAGGATGCATGACATGATTGAAGATATGGGCAGAGAAATTGTGAGGCTGGAAGCACCCTCAAAGCCGGGTGAACGCAGTAGATTATGGTTCTCCGAAGATATTCTTCATGTCTTCAAAGAGAACAAGGGATCTGATAAAACTGAGATCATTATGCTACACCTACTCAAAGATAAAAAAGTACAATGGGATGGAAATGCATTGAAGAAGATGGAAAACCTTAAAGTATTGGTGATAGAAAAAGCTCACTTTTCCAGAGGACCTAATCATCTCCCAAAAAGTTTAAGAGTGCTAAAATGGTGTGATTATCCTGAACCATCATTGCCGGTTCACTTTGATCCGAAGAAACTTGTCATACTTGACTTGTCTTTGAGTTCTATTACTTTTGAAAATCAAGTGATCATGAAATTCAAATCTTTAAGGGAAATGAAGTTAAGTGGATGCCAATCATTAAAGCAAGTACCTGACATGTCAGGAGCTCCGAATTTGAAGAAACTGCATCTCGATTCCTGCAAGAATTTAATTCAAGTTCATGATTCCGTCGGGTTCCTTCAAAAACTTGAAGATTTGAATCTTAATCGTTGCACCAGTCTCAGTGTTCTTCCTCAAGGCATCAACTTACCCTCTCTTAAAACCATGTCCCTTAGGAATTGTACAAGTATCAAGATTTTTCCAGAAACTTTAGGTAAGATGGTCAACATAACATATCTTGGTCTAAGTGATACCGGCATAAGTGAATTGCCCTACTCCATTGGACTTCTTGTGGGGCTTGCAAACCTTTCTATAGATAGATGCAACAAGCTACTTGAATTACCAAATAGTATTTTTATGTTGCCAAAACTGAAGACTTTGGAGGTTTATAGTTGTAAGAGGCTTGCACGAATTAAGAAGGGCAAAGATCAACGGCGGGAAACAACGTCTTCAGATATGACAAGTGTTGTTGACTTCAGCTTTTGCCATCTAACAGAAGAATTTCTCGTTACACTTCTTCCTTGCTTTCACCATGTCACAAATTTATCCCTTGATTACAGCAGTATCACAATCCTTCCGTCATGCATCAATGCATGTCACTCTTTGAAGGAACTTACTTTGAATAACTGTACAGAACTCCGAGAAATCAAAGGCCTGCCACCAAACATAAAACATCTTAGTGCAATAAATTGTACATCATTGACTTCCAAATCCAAGGAAATGTTACTGAATCAGATACTACACATTTCCGGGGCCAAATATATCTGTTTTCCAGGATCAACTATCCCAAGTTGGTTCCATCGATATAGAATGGAACCGTCCCTGTCCTTCAGGTTCCGAAACAAATTGCCACAGATGGCTCTTAGTACTATGGTAGTTTCAGGTGGTTGTTTTTTTTCGAAACAGCGTCTTAAGTATGACTTCGACCTGATCATTAATGGCAGTCAACGGCTCACAAACTTTCTCCGTGTTAGGTGGTCTAAAGCAAATGCATTTGATACAAATTTAAATCATATAATTCTGCTGGAACTGCGGCTCAAAGCTAGCCTTGATATAACTGGAAAACTATTTATTAAGAATGGATGGAACCATGCTGAGATTTCATTAACAAATAAAGGTGAATATATGAAATGGATGAGACTTCATGTATGGGAACAAAAATCAAACATGGCAGATGTTCAAACTATAAATCCTATCCTGATGTTGCAACAGAAGGAAAAGAAAATTGCCACACAAGGAGATAGATGA 3192 0.3863 MATMKDLKPWPPSSFTNEWVYDVFLSFRGEDTRKGFTGNLYNALCRKGINTFIDDQGLRKGEEITLALSMAIQQSRIAIVIFSKNYASSTFCLEELTKIMECIKHKGRLVWPVFYQVDPSDVRHQTGSYAKALANHDRKKSTDKAKVKQWRLALREAGNVVGSHFKDGYEYKFIEKIIQEVSEKINRKPLHVAKYPVGLESRVQKVNSLLEIESKEGIHMVGVYGMGGMGKTTLACAVYNYIADQFDSLCFLGDIRENSVKRGLVQLQEMLLLELAGEKDVKLCSLNKGISIIKSRLRGKKTLLILDDVDSLEQLNALAGGLDWFGSGSRVIITTRDKHLLDVYGVEKLYEVEGLNRQEALQLFGWNAFKTQEIDPRYVDISKRVVLYTKGLPLAVEIIGSDLYGKTKLEWKSALDTYEKIPHENIQEILRVSYDGLKEFEKEVFLDIACFFKGGKLSDVMNILSSGRGFDPHYAIQVLIDKSLVKVDDYRVRMHDMIEDMGREIVRLEAPSKPGERSRLWFSEDILHVFKENKGSDKTEIIMLHLLKDKKVQWDGNALKKMENLKVLVIEKAHFSRGPNHLPKSLRVLKWCDYPEPSLPVHFDPKKLVILDLSLSSITFENQVIMKFKSLREMKLSGCQSLKQVPDMSGAPNLKKLHLDSCKNLIQVHDSVGFLQKLEDLNLNRCTSLSVLPQGINLPSLKTMSLRNCTSIKIFPETLGKMVNITYLGLSDTGISELPYSIGLLVGLANLSIDRCNKLLELPNSIFMLPKLKTLEVYSCKRLARIKKGKDQRRETTSSDMTSVVDFSFCHLTEEFLVTLLPCFHHVTNLSLDYSSITILPSCINACHSLKELTLNNCTELREIKGLPPNIKHLSAINCTSLTSKSKEMLLNQILHISGAKYICFPGSTIPSWFHRYRMEPSLSFRFRNKLPQMALSTMVVSGGCFFSKQRLKYDFDLIINGSQRLTNFLRVRWSKANAFDTNLNHIILLELRLKASLDITGKLFIKNGWNHAEISLTNKGEYMKWMRLHVWEQKSNMADVQTINPILMLQQKEKKIATQGDR 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1887g00053 1063 Gene3D Ribonuclease Inhibitor 531 795 IPR032675 -
Vivi1887g00053 1063 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 818 IPR044974 GO:0006952
Vivi1887g00053 1063 SMART till_3 20 160 IPR000157 GO:0007165
Vivi1887g00053 1063 PRINTS Disease resistance protein signature 296 310 - -
Vivi1887g00053 1063 PRINTS Disease resistance protein signature 389 403 - -
Vivi1887g00053 1063 PRINTS Disease resistance protein signature 220 235 - -
Vivi1887g00053 1063 PRINTS Disease resistance protein signature 696 712 - -
Vivi1887g00053 1063 FunFam Disease resistance protein (TIR-NBS-LRR class) 17 187 - -
Vivi1887g00053 1063 Pfam NB-ARC domain 201 435 IPR002182 GO:0043531
Vivi1887g00053 1063 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Vivi1887g00053 1063 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 162 IPR035897 -
Vivi1887g00053 1063 Gene3D Ribonuclease Inhibitor 796 915 IPR032675 -
Vivi1887g00053 1063 Pfam TIR domain 21 188 IPR000157 GO:0007165
Vivi1887g00053 1063 SUPERFAMILY "Winged helix" DNA-binding domain 425 530 IPR036390 -
Vivi1887g00053 1063 Gene3D - 354 438 IPR042197 -
Vivi1887g00053 1063 Gene3D - 17 182 IPR035897 -
Vivi1887g00053 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 448 IPR027417 -
Vivi1887g00053 1063 SUPERFAMILY L domain-like 540 905 - -
Vivi1887g00053 1063 Gene3D - 183 347 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1887g00053 9 786 WRKY Transcription Factor Family AT4G12020 30.521 9.40e-90 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1887g00053 - - ccaj:109800328 1259.97