Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1887g00032 ATGTTGAATGTGGATGTTGTTGGTAACAAGAGAAGGAAAAGATGTGGGAGGGTTTTTAGGTTCAAGAATTTCGGGGAACAAGGTTATCCGGTCATGTTTAATGGTTCATCGTTTCGTGAAAATGTGAATGTTTTACTTGAATATGCGAATTTGGAGAGTAATATAAATATGGGAATGCCTATGTGGTCTTTTCAACTTGAATTGCACCATCATCCACCTTTGCATGTTTTGTTGTTTGTGATTGAAGAATCAATTGAAGCAGCTATGAATCGTCATTGCAACCATTGTCAATATGTTGGTTGGGGCAACCATTTAATTTGCAATAAGAAGTATCATTTTCTATTACCTTCAAAGGAGGCACTAAGTAGCTGCACTACCTGTGAAAATTGCTGTGACTCAATTGGTACAATGAACAATGGTAAGTCAAAATTAATAGAATTAGAAGGCCATATGATGCATGGTGTATTTCACTCTAATGGATTTGGACATTTGCTATGTGTCAATGGCTTGGAAATGGGTTCTAATTTGGGTGGCAACCAAATCATGGAGTTTTGGAATCGTTTGTGCAATGGATTGCAAGCAAGGAAAGTGAGTTTGAATGATACATCACAAAAAAGAGGCATGGAATTGAGACTTGTGAATGGAATAGCATATAGTGAGCCATGGTTTGGTCGTTGGGGATACAAATTTGGTAGAGGATGTTTTGGTGTAACACAATCAATGTACCAAAAAGCCATAGAAGCAATAAGAAGTATGCCACTATACTTACTCACACACCACATTGCAAATTCAAGTCATGAAATCCCATTAATCTTCTCAAGGTACCAAACACTTTCTGATCACTCTCTTATAACCCTTGGTGACTTGTTTCACTACATGTTAGAGCTCAAGTCGCGGCTTCCGCGCGATACATGCATTGGTTCCTACAACACAAACGCCCTAGTCGAAACAAATTGTCGTTGGTCGCCTAAAAGGATTGAAATGGCGACGAGGGTTATCGTCGAGGCCTTGAAAAGAACGGAATTTAGATGGATTTCAAGACAAGAAGTTAGGGATGCAGCGCGCGTTTACATAGGTGACACGGGTTTGTTGGATTTTGTTTTGAAGTCGCTAGGTAACCATGTTGTTGGAAACTATTTGGTTCGTCGGAGCTTGAATCCGGTTACCAAAGTTTTGGAGTATTGTTTAGAAGACATTTCTAATGCTTACCCTTGTCATGAAGGGTTGGTTATGAGTAGTAGTAATAAAGTGAAGGACAAGTACAAGATCACAAGAGGTCAACTCATGAAAGACATGATTTGTTTGTACAAGTACATACTTATTGATACAAAACCAATTATAGGGTCAGAATTTCTTTCAGCTATACCATTGGCAGCTACAATAATTCTTGACACAAAGTATCTTATCAAAGACTATGGAGAGGTACCTTTGCAAGTTGAATTAGGATCAGAAGGAAAATTCAATATTTATTGTACAATTTTGTTGAGGAATGTTAACAATGTAGGACATGATCATGAGTATTATTTGAACAATGAAATGTCAATGCCTCCTTATGAATGTATCACATTGAAAAATTGTGCTACAATTAATGACTTAAAGCTAGAAGTTGAAAGGAATTTTAGGGAAATCTATTGGGGGTTAAGGGGTTTTGTGGTGGAATCAAATGAGAATTTGATGAATGCAAAAGGGAATGAAATGGTTTTTGGAATGATTGAAGTTGGTGGAAAACTTGTTCTTGAAGGTTGGCATGGTAGTGACATGGTTGAGCAAATATGTGAAAGGAATCCAAATAAGGGAATTGTGGATTGCACTTGTGGAACTAAAGAAGATGATGGTGAAAGATTGGTGTCTTGTGATATTTGTGAAATTTGGCAACACACTAGATGTGTTAGAATTCCAAATGATGAAGAAGTTCCTCATATTTTTCTATGCAAAAGGTGTGAGCAAGAAATTGTTCTTTTCCCTTCTTTGCCATAA 1977 0.3728 MLNVDVVGNKRRKRCGRVFRFKNFGEQGYPVMFNGSSFRENVNVLLEYANLESNINMGMPMWSFQLELHHHPPLHVLLFVIEESIEAAMNRHCNHCQYVGWGNHLICNKKYHFLLPSKEALSSCTTCENCCDSIGTMNNGKSKLIELEGHMMHGVFHSNGFGHLLCVNGLEMGSNLGGNQIMEFWNRLCNGLQARKVSLNDTSQKRGMELRLVNGIAYSEPWFGRWGYKFGRGCFGVTQSMYQKAIEAIRSMPLYLLTHHIANSSHEIPLIFSRYQTLSDHSLITLGDLFHYMLELKSRLPRDTCIGSYNTNALVETNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARVYIGDTGLLDFVLKSLGNHVVGNYLVRRSLNPVTKVLEYCLEDISNAYPCHEGLVMSSSNKVKDKYKITRGQLMKDMICLYKYILIDTKPIIGSEFLSAIPLAATIILDTKYLIKDYGEVPLQVELGSEGKFNIYCTILLRNVNNVGHDHEYYLNNEMSMPPYECITLKNCATINDLKLEVERNFREIYWGLRGFVVESNENLMNAKGNEMVFGMIEVGGKLVLEGWHGSDMVEQICERNPNKGIVDCTCGTKEDDGERLVSCDICEIWQHTRCVRIPNDEEVPHIFLCKRCEQEIVLFPSLP 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1887g00032 658 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 651 - -
Vivi1887g00032 658 CDD PHD_MMD1_like 602 647 - -
Vivi1887g00032 658 Pfam PHD-finger 603 649 IPR019787 -
Vivi1887g00032 658 SUPERFAMILY FYVE/PHD zinc finger 595 650 IPR011011 -
Vivi1887g00032 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 593 653 IPR013083 -
Vivi1887g00032 658 ProSitePatterns Zinc finger PHD-type signature. 603 647 IPR019786 -
Vivi1887g00032 658 SMART PHD_3 602 648 IPR001965 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1887g00032 7 658 PHD Transcription Factor Family AT5G22260 50.949 0.0 664
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi1887g00032 PHD 1.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1887g00032 K26271 - gmx:100780210 1113.21