Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1887g00014 ATGAGTTCTAGGTTATCTGGGAAGGTGAAGTGGTTCAATGATCAGAAGGGGTTTGGATTCATTACCCCTGATGATGGTACCGAGGAGCTTTTTGTTCACCAATCTCAGATCCAGACTGATGGTTTCCGGAGCCTTGCTGAGGGAGAGTCTGTTGAGTATCAGGTTGAATCTGATTCCGATGGACGATCCAAGGCTGTGCAGGTGACTGGACCTGATGGTGCGTCTGTGCAGGGAAGCAAGCGTGGTGGTGGAGGCGGTGGTTACGGTGGAGGAGGTGGTTATGGAGGAGGTGGTGGTGGTTACAACAGTGGCGGTGGAGGTGGTTATGGTGGAAGCAGAGGCGGAGGAGGATATGGTGGAGGTGGCGGTGGATATGGTGGAGGAGGAGGCGGTTATGGTGGTGGTGGACGAGGAGGAGGACGCGGTGGAGGCGGCGGTGGTGCCTGCTATAACTGCGGTGAATCTGGTCACTTGGCGAGGGATTGCAGCTCTGGTGGAAGCGGTGGAGGAGGTGGTGGAAGATACGGAGGCGGTGGTGGTGGAGGTGGTGGTGGCGGTGGAAGCTGCTACAGCTGTGGAGAGTCTGGTCATTTTGCCAGAGATTGCCCTACCAGTACCCGTTAG 624 0.5657 MSSRLSGKVKWFNDQKGFGFITPDDGTEELFVHQSQIQTDGFRSLAEGESVEYQVESDSDGRSKAVQVTGPDGASVQGSKRGGGGGGYGGGGGYGGGGGGYNSGGGGGYGGSRGGGGYGGGGGGYGGGGGGYGGGGRGGGRGGGGGGACYNCGESGHLARDCSSGGSGGGGGGRYGGGGGGGGGGGGSCYSCGESGHFARDCPTSTR 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1887g00014 207 ProSiteProfiles Cold-shock (CSD) domain profile. 4 70 IPR002059 GO:0003676
Vivi1887g00014 207 ProSiteProfiles Zinc finger CCHC-type profile. 189 203 IPR001878 GO:0003676|GO:0008270
Vivi1887g00014 207 SUPERFAMILY Nucleic acid-binding proteins 3 70 IPR012340 -
Vivi1887g00014 207 Pfam Zinc knuckle 188 203 IPR001878 GO:0003676|GO:0008270
Vivi1887g00014 207 Pfam Zinc knuckle 148 163 IPR001878 GO:0003676|GO:0008270
Vivi1887g00014 207 MobiDBLite consensus disorder prediction 55 84 - -
Vivi1887g00014 207 ProSiteProfiles Zinc finger CCHC-type profile. 149 162 IPR001878 GO:0003676|GO:0008270
Vivi1887g00014 207 PANTHER COLD SHOCK DOMAIN PROTEIN 2 2 204 - -
Vivi1887g00014 207 Gene3D - 1 82 IPR012340 -
Vivi1887g00014 207 ProSitePatterns Cold-shock (CSD) domain signature. 18 37 IPR019844 -
Vivi1887g00014 207 Gene3D - 140 171 - -
Vivi1887g00014 207 Gene3D - 184 207 - -
Vivi1887g00014 207 PRINTS Cold shock protein signature 28 37 IPR002059 GO:0003676
Vivi1887g00014 207 PRINTS Cold shock protein signature 43 61 IPR002059 GO:0003676
Vivi1887g00014 207 PRINTS Cold shock protein signature 7 22 IPR002059 GO:0003676
Vivi1887g00014 207 SUPERFAMILY Retrovirus zinc finger-like domains 139 205 IPR036875 GO:0003676|GO:0008270
Vivi1887g00014 207 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Vivi1887g00014 207 SMART c2hcfinal6 188 204 IPR001878 GO:0003676|GO:0008270
Vivi1887g00014 207 MobiDBLite consensus disorder prediction 60 74 - -
Vivi1887g00014 207 CDD CSP_CDS 7 70 IPR002059 GO:0003676
Vivi1887g00014 207 Pfam 'Cold-shock' DNA-binding domain 6 70 IPR002059 GO:0003676
Vivi1887g00014 207 SMART csp_8 6 71 IPR011129 GO:0003676
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Vivi1887g00014 CSD 9.8e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1887g00014 - - cave:132187834 164.081