Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1887g00011 ATGGCAAACTTGTGGTGTGTAGTGCTCACATTCGTCATGCTATTCCTTCCGGTATTAGTCTTACCAGAAGGCTCCCACACAACCATTTATATGATTTGTATATTGGTCTTCATCGTGTTTTGTATATTTGTAAATTTCTTTACATCATTTAAAAAAGTGGACAATTTCGAAGAATCCATTCAGATTCAAATTCTCCAAGAACGGAGAGAGTTTCATGCTAATCAAAATGCTGCATGGTCTAGGGTTATACCGAATTCGCAGAACAATATGCCTTTTGGTACCATCGCAGAGATGGCTCGATGGGCGATAAGGGCATTGCCTCCGGTTAAAAGTTTTGATGGAGAGGAAGGTAGGGATTGTCCAATCTGCATGGAAGAGTTTGAGAAAGGAATGTTGATTCAGTCTTTTGGTGTATGTGGACATGAATATCATACATCTTGTCTCAATGCATGGTTATTAGGAGGAAAAACTACTTGTCCAGTTTGTCGCAAAGATCTGGCGGGATCGGCGGGATCTGTTTAA 522 0.4042 MANLWCVVLTFVMLFLPVLVLPEGSHTTIYMICILVFIVFCIFVNFFTSFKKVDNFEESIQIQILQERREFHANQNAAWSRVIPNSQNNMPFGTIAEMARWAIRALPPVKSFDGEEGRDCPICMEEFEKGMLIQSFGVCGHEYHTSCLNAWLLGGKTTCPVCRKDLAGSAGSV 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1887g00011 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 170 IPR013083 -
Vivi1887g00011 173 SMART ring_2 120 162 IPR001841 -
Vivi1887g00011 173 ProSiteProfiles Zinc finger RING-type profile. 120 163 IPR001841 -
Vivi1887g00011 173 Pfam Ring finger domain 119 163 IPR001841 -
Vivi1887g00011 173 SUPERFAMILY RING/U-box 111 166 - -
Vivi1887g00011 173 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 27 165 IPR044675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1887g00011 77 166 C3H Transcription Factor Family AT1G20823 30.612 4.38e-11 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1887g00011 - - vvo:131643122 337.035