Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1887g00005 ATGGCAGATAGCGTGGTTTCTTTCCTTTTGGAACACTTATCCCAATTGCTGCTACGCGAAGCTAATTTGCTGTTTGGAGTGGAAGACAAAATCATATCCCTCCGTAACGAACTTGAAATCATAAACGTATATCTCAAAACTTCTTCTCAAGGGAAGAACAACACAGAATTGAAACAAACGGTTCTGAGTCAGATCAGAGATGTCTCCCACTTAGCTGAGGATGTTATCGACACATTCATCACCAACATCGCCTTGTACAAGAACAGAAATCTGCCGGGAAGAATGCTTCACAGTATCGATCATGCAAAGTTGCTCCACGACGTAGCAGAGAAAATTGACAAGATCAAAACGGTGCTCAAGGAGATACATGAAAACAAGATGAAATACTGTGAAGAAAGCAGTGATCAATCAACATCAGCAAGAGAAGAGGAGGAGAGAATGAAATCACTTGACAGATTAAGAAGAAATGTGGAGGAGGAAAATGTAGTGGGCTTTGTCCATGAATCGGAGGTACTCATAAATAGACTCATACAGAATGGTTCGCCGCAACTTAATGTAGTTTCAATCATTGGTATGGGTGGATTAGGCAAAACAACCTTAGCACGAAAAGTGTATAACAGTGATAAGGTGAAGAAGCACTTCAATTGCCGCGCATGGGTTTATGTGTCAAACGAATGTAGAGTCAGAGAGCTTTTGCTTGGTCTTCTTCAAAATTTGATGCCAAACAATGATTTTGAACGTAGAAGCATAAGTGATGATGAGCTGAAGAAAAGAGTGCGGGAATGCTTGGAGTTGAAAAGGTATCTGCTGGTTCTTGATGACTTGTGGAAAATACAAGATTGGGAGGAGGTAAAAGATGCTTTTCCGGTTGAAAATAAAGGAAGCAGAATATTGATAACCAGTCGTTTGAAAGAAGTTGCCTCGCATACAGGCCGAGATCCTCCTCACTATCTTCAATTTCTCAGTGAAGAACAAAGTTGGGAGCTGTTTTCCAAAAAAGTATTTAGAGGAGAAGAATATCCTTGTGATCTTGAATCTCTAGGTAAACAAATTGTAAAAAGTTGCGGCGGTTTGCCACTTTCAATTGTGGTTCTCGCAGGACTTCTGGCAAATAAGGAAAAGTCACACAAGGAATGGTTCAAAATATTCGGTCATGTTAACTGGTATCTTACCCAAACCGAGGCTCAAGTAAAAGATGTACTCAAACTCAGTCTCGATAACTTGCCATCAAGATTGAAACCTTGTTTTCTGTATCTAGGGATTTTCACTGAAGATTCTGAAATACGTGTAAGGCAATTGTTGCAACTCTGGATCGCTGAAGGATTTATACAAGAAACAGGAAGTAGAGATGTACGCGATGTTGCTGAAGACTATTTGTATGAGCTCATTGATCGGAGTTTGATCCAAGTAGCACAAGTGAAAGATAACAGAGGCGTGAAATCATGCCGCATCCATGATCTTCTCAGAGATCTCTGCATATTAGAGGGCAAAGAGGATAAATTCTTCCAGGTTTGCACTGAAAACAACATTTCAATCACTACAAAACCTCGTAGATTGTCTGTGCATTCTAGCATGTCTCACTATGTTTCTTCAAGCACTGTTGACCATTCATGTGTTCGTTCGTTGTTTTGTTACGACCCGAATCATGTTTATCGCGACGAATGGAAATGGATTACCGAAAACTGCAAATTGGTTCGGGTGTTAGATATTGAAGGATTATGTTGTTTTAAGGTTCCTTCAAACTTAGGGAACTTCATTCACTTGAGGTACTTAAGAATAAACTCGCAGTGTTTTTCAAGTGTTCCAGATTCGATATGCAACCTTCAGAATTTACAAACATTAGACTTTTTATCTTCACCCTGGGACTCCACAATTTCTTTTCCCATCACAATATCAAAGCTCAAGCATCTAAAGCATGTGTATACTTATCGGGTAATTGTGCTCCGGGGGCATCGTTTAAAATCAAATGTTGGTGTAATGTGGAATCTTCAAACAATCTCTCGCATTGTACTCGATACAAAAACAACATATCTCATAAGCAAAGGAAGTTTCCCCAAACTAAGAAAATTAGAAGTGCTTATCTCCTCAAAGTTTAAAGGTCATGTGCCCAAAATGCTGCTAAGCCTACAACAACTGAAAGATTTGAATAAGCTAGAAATCGAGTTTGTACTGATGAAAGATCATTCAGAAGTGTGA 2196 0.3939 MADSVVSFLLEHLSQLLLREANLLFGVEDKIISLRNELEIINVYLKTSSQGKNNTELKQTVLSQIRDVSHLAEDVIDTFITNIALYKNRNLPGRMLHSIDHAKLLHDVAEKIDKIKTVLKEIHENKMKYCEESSDQSTSAREEEERMKSLDRLRRNVEEENVVGFVHESEVLINRLIQNGSPQLNVVSIIGMGGLGKTTLARKVYNSDKVKKHFNCRAWVYVSNECRVRELLLGLLQNLMPNNDFERRSISDDELKKRVRECLELKRYLLVLDDLWKIQDWEEVKDAFPVENKGSRILITSRLKEVASHTGRDPPHYLQFLSEEQSWELFSKKVFRGEEYPCDLESLGKQIVKSCGGLPLSIVVLAGLLANKEKSHKEWFKIFGHVNWYLTQTEAQVKDVLKLSLDNLPSRLKPCFLYLGIFTEDSEIRVRQLLQLWIAEGFIQETGSRDVRDVAEDYLYELIDRSLIQVAQVKDNRGVKSCRIHDLLRDLCILEGKEDKFFQVCTENNISITTKPRRLSVHSSMSHYVSSSTVDHSCVRSLFCYDPNHVYRDEWKWITENCKLVRVLDIEGLCCFKVPSNLGNFIHLRYLRINSQCFSSVPDSICNLQNLQTLDFLSSPWDSTISFPITISKLKHLKHVYTYRVIVLRGHRLKSNVGVMWNLQTISRIVLDTKTTYLISKGSFPKLRKLEVLISSKFKGHVPKMLLSLQQLKDLNKLEIEFVLMKDHSEV 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1887g00005 731 Gene3D - 139 314 IPR027417 -
Vivi1887g00005 731 Pfam NB-ARC domain 170 404 IPR002182 GO:0043531
Vivi1887g00005 731 Gene3D - 320 403 IPR042197 -
Vivi1887g00005 731 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 419 IPR027417 -
Vivi1887g00005 731 Coils Coil 140 160 - -
Vivi1887g00005 731 PRINTS Disease resistance protein signature 262 276 - -
Vivi1887g00005 731 PRINTS Disease resistance protein signature 186 201 - -
Vivi1887g00005 731 PRINTS Disease resistance protein signature 355 369 - -
Vivi1887g00005 731 Gene3D - 1 129 - -
Vivi1887g00005 731 Pfam Rx N-terminal domain 5 84 IPR041118 -
Vivi1887g00005 731 CDD RX-CC_like 2 122 IPR038005 -
Vivi1887g00005 731 Gene3D - 404 494 IPR036388 -
Vivi1887g00005 731 FunFam Probable disease resistance protein At1g61300 144 315 - -
Vivi1887g00005 731 SUPERFAMILY L domain-like 484 716 - -
Vivi1887g00005 731 PANTHER DISEASE RESISTANCE PROTEIN RP 54 720 IPR044974 GO:0006952
Vivi1887g00005 731 FunFam Probable disease resistance protein At1g63360 405 494 - -
Vivi1887g00005 731 Gene3D Ribonuclease Inhibitor 525 725 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1887g00005 173 491 WRKY Transcription Factor Family AT5G45050 25.077 1.14e-09 60.1