Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1881g00002 ATGTCTTTTCCTTCTATGCCAGTTATCATCATCACTAGTCTTTTGTTTGTTCTATCTCATATTTCATTTGCAATAGATACTATCACCCAGTCAACTTCATTTCCTGATGGCAGCACTTTGGTTTCTAAAGATGGAAGCTTTGAATTGGGATTCTTTGGTAATTCCTCAAACCGTTATATAGGAATTTGGTATAAAAATATCCCGGTTCGAAGAGTTGTTTGGGTTGCAAATCGCGATAATCCAACCAAAGATAATTCGAGCAAGTTGATCATAAATCGAGATGGAAATATTTTGCTTCTCAACCACAATGAATCTCTTGTTTGGTCAATAAATGCAACAAAAAAGATTTCGAGTCCCGTTGTCCTTCAGCTGTTGGATAACGGGAATTTTGTTCTTAGGTATAAGAATTCAAATTCAAATTCAAATTCGGAGTCAAATTTGGGAGGAGAAGAAAATTTTTTGTGGCAGAGTTTTGATTATCCGTGTGATACAATATTATCAGAAATGAAATTTGGATGGAACAAAAAAACTGGATTTGAAAAGCGTCTTGCAGCTTGGAGAACCGCGGATGATCCATCTTCGGGTAATTTAACTATAACCATGATGCATACCAGCAATCCCGAAACTATAATTTGGAAAGGGTCAACAAAATATTATAGGTCGGGACCATGGAATGCTCAAACTAGTGGAGTTGTTGGATTAAAGACTAATCCACTTTATAATTTCGAGTTTATCAACAACGAGGATGAGGCGTATTATATGTACACACTAAAAAATAAAAGTGTGGTCTCAATAATGGTTATCAACCAAACCCTCTCGTCTCGTCAACGTCTCATTTGGGTTCCCGAGTCAAAAACATGGAGTATTTACCAATCATTGCCACTTGATGGTTGTGATGTATACAACATTTGTGGTCCAAACGGACATTGCATCATTGATGGGTCGCCAATGTGTCAATGTTTAGATGGATTTGAGCCAAAATCTTATCAACAATGGAATGCAATGGATTGGACCCAAGGATGTGTGCGGAGTGGAAATTGGAGTTGTGGAGTTAAAAATCAAGACGGGTTTCATAAATTTGTCGGGATGAAATTTCCGGATACTACAAATTCTTGGATCAATCTAAACATAACCCTTGATCATTGCAAAATGAAATGCTTGCAAAATTGTTCATGCACTGCCTATACATACTTGGATCCAACCGGAAAAGTTAGTGGTTGCTCTCTTTGGTTTAATGATCTTCTTGATTTGAGACTTTCACAAAGTAGTGGACAAGATTTATATGTTCGTACGGATGCTAGTTCAGATATTGATGCTAAACATGGGCAGAGGAAAAAAGTGATTTTGGCAGTTTCTATCATAATTTCCATTGCCCTTTTGATGCTATTGGCTCTCTCCTACATTTATATAACCAAAGTAAAACATAAAGGGGAAAATCTCAAAAAGGGCCACGAAGATTTTGAGCTTCCTCTATTTGATGTATCCTCAATGCTCAAGGCTACAAATAACTTCTCCTTCAATAATAAACTCGGCGAGGGTGGTTTCGGACCCGTATATAAGGGTACATTGATAGATGGACAAATAGTTGCAGTCAAAAGGCTATCAGGAAATTCTGAACAAGGACTGATAGAATTTAAAAACGAAGTCATATTGTGTGCTAAATTGCAACATCGAAATCTTGTGAAGGTTCTTGGTTGTTGCATTGAAGGAGAGGAAAAAATATTACTATATGAATACATGCCTAAAAGAAGTCTTGATTTATTTATTTTTGATCCGATTCAAAGCAAATTATTAGATTGGTCTATGCGTTTTAATATCTTGAATGGAATTGCTCGAGGACTTCAATATCTTCATCAAGATTCTAGGTTAAGGATCATACACAGAGATTTGAAAGCGAGTAACATTTTATTAGATAATGAAATGAACCCAAAAATTTCAGATTTTGGCCTTGCTAAAATGTTCGGAGGTGATCAAATCGAAGGAAAGACAAGAAGAATAATTGGAACATATGGTTACATGGCGCCAGAGTATGTCATTCATGGATTATTCTCCATAAAATCCGATGTGTTTAGCTTTGGCGTGTTATTGCTAGAAATAATAAGTGGGAAGAAAAATAGATCACTTACCTATCATGAACACGATCACAATCTTCTTTGGCATGCATGGAGATTATGGAGAGAGGGAATCCCACATGAATTGATTGATAATTGTTTAAAAGACACATGTGTTCAACATGAAGCTTTACGATGCATTCAAATAGGTCTTCTATGTGTGCAACATGTTCCTGATTATAGGCCAAACATGCCACATGTGATTATGATGTTAGGTAGTGAAAGTACTTTACCTCAACCAAAGGAACCGGGTTTCTTGATGGAAATGATCTCAATTGAAGAACAATCTTTTTCTGAAAGACGAGCATCTTCCGTGAATGAAGTAACTCTCTCAATATTACGTTCAAGATAG 2463 0.3634 MSFPSMPVIIITSLLFVLSHISFAIDTITQSTSFPDGSTLVSKDGSFELGFFGNSSNRYIGIWYKNIPVRRVVWVANRDNPTKDNSSKLIINRDGNILLLNHNESLVWSINATKKISSPVVLQLLDNGNFVLRYKNSNSNSNSESNLGGEENFLWQSFDYPCDTILSEMKFGWNKKTGFEKRLAAWRTADDPSSGNLTITMMHTSNPETIIWKGSTKYYRSGPWNAQTSGVVGLKTNPLYNFEFINNEDEAYYMYTLKNKSVVSIMVINQTLSSRQRLIWVPESKTWSIYQSLPLDGCDVYNICGPNGHCIIDGSPMCQCLDGFEPKSYQQWNAMDWTQGCVRSGNWSCGVKNQDGFHKFVGMKFPDTTNSWINLNITLDHCKMKCLQNCSCTAYTYLDPTGKVSGCSLWFNDLLDLRLSQSSGQDLYVRTDASSDIDAKHGQRKKVILAVSIIISIALLMLLALSYIYITKVKHKGENLKKGHEDFELPLFDVSSMLKATNNFSFNNKLGEGGFGPVYKGTLIDGQIVAVKRLSGNSEQGLIEFKNEVILCAKLQHRNLVKVLGCCIEGEEKILLYEYMPKRSLDLFIFDPIQSKLLDWSMRFNILNGIARGLQYLHQDSRLRIIHRDLKASNILLDNEMNPKISDFGLAKMFGGDQIEGKTRRIIGTYGYMAPEYVIHGLFSIKSDVFSFGVLLLEIISGKKNRSLTYHEHDHNLLWHAWRLWREGIPHELIDNCLKDTCVQHEALRCIQIGLLCVQHVPDYRPNMPHVIMMLGSESTLPQPKEPGFLMEMISIEEQSFSERRASSVNEVTLSILRSR 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1881g00002 820 Pfam Domain of unknown function (DUF3403) 778 820 IPR021820 GO:0004674
Vivi1881g00002 820 ProSiteProfiles Bulb-type lectin domain profile. 25 145 IPR001480 -
Vivi1881g00002 820 CDD EGF_CA 296 328 - -
Vivi1881g00002 820 SMART ntp_6 352 431 IPR003609 -
Vivi1881g00002 820 Pfam PAN-like domain 349 417 IPR003609 -
Vivi1881g00002 820 ProSiteProfiles PAN/Apple domain profile. 349 432 IPR003609 -
Vivi1881g00002 820 PIRSF SRK 1 820 IPR024171 GO:0004674
Vivi1881g00002 820 ProSiteProfiles EGF-like domain profile. 294 330 IPR000742 -
Vivi1881g00002 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 469 579 - -
Vivi1881g00002 820 Pfam S-locus glycoprotein domain 219 328 IPR000858 GO:0048544
Vivi1881g00002 820 SUPERFAMILY Protein kinase-like (PK-like) 487 790 IPR011009 -
Vivi1881g00002 820 ProSiteProfiles Protein kinase domain profile. 504 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1881g00002 820 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 14 766 - -
Vivi1881g00002 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 783 - -
Vivi1881g00002 820 Gene3D Transferase(Phosphotransferase) domain 1 580 785 - -
Vivi1881g00002 820 SMART serkin_6 504 748 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1881g00002 820 CDD PAN_AP_plant 348 431 - -
Vivi1881g00002 820 Pfam D-mannose binding lectin 72 187 IPR001480 -
Vivi1881g00002 820 Pfam Protein tyrosine and serine/threonine kinase 505 710 IPR001245 GO:0004672|GO:0006468
Vivi1881g00002 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 192 IPR036426 -
Vivi1881g00002 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Vivi1881g00002 820 CDD STKc_IRAK 510 775 - -
Vivi1881g00002 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 158 - -
Vivi1881g00002 820 Gene3D Phosphorylase Kinase; domain 1 468 579 - -
Vivi1881g00002 820 Gene3D - 19 158 IPR036426 -
Vivi1881g00002 820 SMART blect_4 31 161 IPR001480 -
Vivi1881g00002 820 CDD B_lectin 36 161 IPR001480 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1881g00002 447 792 Receptor kinase-like Gene Family AT4G23230 55.143 8.33e-127 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1881g00002 PK_Tyr_Ser-Thr 2.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1881g00002 - - mtr:11419710 1214.91