Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1879g00001 ATGGGTCGTCGCAAAATTGAAATTGTGAGAGTGAAAGACTCTGCTGCGAGGCAAGTCACATTCTCCAAGCGTCGAACAGGCTTATTCAAAAAAGCAAATGAGCTTGCCATCTTATGTGGGGTTGAAATTGCTGTTGTTGTGCTCTCACCAGGGAATAAGCTTTACTCGTTTGGAAATCCGAGTGTTGATAGTCTTGCGTCGAAGTTTCTTCAGAAAGAGTTCAATCCAAATCATGTGTTAGAAAATTCTTCTTCTAACATAGAGGATCTGAATCAACAACTTGATGATGTTCAAGTTGAAATAGATGAGGCTGAAAAGAAAGCTAAGGTTCATGATGAGATCCTAAATAAATACAAAGAGGTCCAATGCACTCAACTCAATGAATTGAAAGATTCATTTATAGAGTTTAAGGGTATGGTGAAATCGCGTATTTGTGATTTTGATATATCAGAATCTATGATGCTTCTTGCAAAGGAACCGGTATTTAGAATTAAAAACTAA 501 0.3713 MGRRKIEIVRVKDSAARQVTFSKRRTGLFKKANELAILCGVEIAVVVLSPGNKLYSFGNPSVDSLASKFLQKEFNPNHVLENSSSNIEDLNQQLDDVQVEIDEAEKKAKVHDEILNKYKEVQCTQLNELKDSFIEFKGMVKSRICDFDISESMMLLAKEPVFRIKN 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1879g00001 166 SUPERFAMILY SRF-like 1 73 IPR036879 GO:0003677|GO:0046983
Vivi1879g00001 166 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vivi1879g00001 166 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vivi1879g00001 166 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vivi1879g00001 166 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vivi1879g00001 166 PANTHER MADS BOX PROTEIN 3 131 - -
Vivi1879g00001 166 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vivi1879g00001 166 FunFam Agamous-like MADS-box protein AGL62 13 79 - -
Vivi1879g00001 166 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vivi1879g00001 166 Gene3D - 14 93 IPR036879 GO:0003677|GO:0046983
Vivi1879g00001 166 Coils Coil 80 121 - -
Vivi1879g00001 166 CDD MADS_MEF2_like 2 71 IPR033896 GO:0000977|GO:0045944
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1879g00001 1 158 Type I MADS-box Gene Family AT2G34440 37.427 3.85e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vivi1879g00001 SRF-TF 7.9e-25 No_clan