Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1870g00013 ATGGCTGCAAAGAGACATCTTAGCTATGAGTTGGAAGATGGTTCTCGGAGGATGTTTGATCCAAGCGATGAAGATCTTATATACATTTACCTCAGAAAGAAGATTCATAAGCCCCTATTTCTACTCAATACTATTATTCAATTAGATGTGTTTCAAACAGAACCTTGGAGGCTACCAAGAGGTATTATGACATCTATTAGCGATAGCAAGTATTATTTCTTTAAAATTAAAAATAGTAGATTTGAAAATAAGGATACAAGACCAGCAGGAAACGGGGAATGGAAGAGCATGGAAAAGAACAAGGAAATTTCTCTACCAAACAATATGTTCACTGGGATAAAAAACACACTCGAATTCTGGAAAATGCAAGGAGGGGAACTTGTAAAAACCGAATGGCTAATGAATGAATTCCGCATTACTTCAAGTGCTCACCCGACCGAGGTTTCAGCTTTTGCAGCATATCGCATCACTAAGACTGTTCTACCAAGCGTAGTTGATATTACAATGGAGGATGGATGTATCTCTCCTCCACCCTCTCCATGA 543 0.3849 MAAKRHLSYELEDGSRRMFDPSDEDLIYIYLRKKIHKPLFLLNTIIQLDVFQTEPWRLPRGIMTSISDSKYYFFKIKNSRFENKDTRPAGNGEWKSMEKNKEISLPNNMFTGIKNTLEFWKMQGGELVKTEWLMNEFRITSSAHPTEVSAFAAYRITKTVLPSVVDITMEDGCISPPPSP 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1870g00013 180 Pfam No apical meristem (NAM) protein 19 139 IPR003441 GO:0003677|GO:0006355
Vivi1870g00013 180 PANTHER NAC TRANSCRIPTION FACTOR 56 19 158 - -
Vivi1870g00013 180 SUPERFAMILY NAC domain 19 157 IPR036093 GO:0003677|GO:0006355
Vivi1870g00013 180 Gene3D NAC domain 22 161 IPR036093 GO:0003677|GO:0006355
Vivi1870g00013 180 ProSiteProfiles NAC domain profile. 13 159 IPR003441 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1870g00013 19 150 NAC Transcription Factor Family AT3G04070 32.609 1.75e-20 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi1870g00013 NAM 1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1870g00013 - - vvo:131631907 235.728