Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1870g00003 ATGGAGTACCATAATAAGGTGCTAATGTTAATGGTGTGTACTGTCTTCTTTTGCTCCATTATGCCGACTTTCTCTAAACAAAACACCTTTACTACTATTGCTCCAAATCAGTTTATCCAATACAATGATAGTCTTGTTTCTGCAGCCGGAACCTTTGAAGCGGGATTTTTCAACTTTGGAGATTCACAACGTCAATACTTTGGTATATGGTACAAGAGCATTTTACCTAGGACTATTGTGTGGGTTGCCAATAGAAATACCCCTGTACAAAACTCAACAGGATTGCTGAAACTCAATGATCAGGGAACTCTTGTTATTCTCGACGGCTCCAAAGGCGCCATCTGGTCCTCCAATTCGTCAAGAAAAATGGTGAAACCAGTTGTTTTATTGTTGTTGGATTCTGGAAACCTTGTTGTGAAAGATGCAAAGAGCAGCAGTGAGAATGAGGATTTGTTGTGGGAAAGTTTTGATTATCCCGGTAACACTTTCCTTGCTGGAATGAAGCTGAAAAGTAATTTAGTTACTGGTCCATATAGATATCTCACATCTTGGAGAAGCTCTGTAGATCCTGCTGAAGGTGAGTGTTCATATAGGATAGATACACATGGTTTTCCTCAATTGGTTAATGCAAAGGGAGCAAGATTTCTGTATAGAGGAGGCTCATGGAATGGATTTCTTTTCACTGGTTTTCCTTGGAATAGAATGCGTAGAGTCTTGAATTTATCAGCAGTGTTCACAGACAAAGAATTCTCTTATCAATATGAAACTTTGAACAGTTCAACTATTACTAGATTGGTGCTAGACCCATACGGAAATTCACAGCGTCTAATATGGTCAGATGGGTCACAAATTTGGGCGGCTATAGTCAGTCGTCCTGCAGACCAGTGTGATAATTATGTCTTGTGTGGTATCAACTCTAACTGCAATATTAATGACTTTCCAATATGTGAATGCTTGAAAGGTTTCATGCCAAAATTTCAACCAAAGTGGGACTCATCAAATTGGTCTGATGGGTGTGTAAGGAAAACACATTTAAATTGTCTCCATGGAGATGGATTTTTTAAGTACACAAGCATGAAGTTGCCAGATACGTCATCATCATGGTTTGACAAGACCTTGAGCCTTGAGGAATGCAAGACAGTGTGCTTGAAAAACTGTTCTTGCACCGCGTATGCAAATTTGGATATCAGATATGGTGGTAGTGGCTGCTTACTTTGGTTTGACAACATTTTGGACATGAGAAGACATCCAAACCAAGGACAAGACATTTACATACGATTAGCATCATCAGAGTTTGATCAACTAAAGAATAAGAGGAACTTGAAGCGTGTTGGTACTCTTGCAGGAGTTATTGCATTCATAATAGGACTCGTCGTTATTATATTGGTCATATTAGCATCTAAAAAGAAGCTTGGGTGTATAAAAATGTTATTTCACAAGAAGGAGACGGAGGATGGTGAGCTGGCAACAATATTTGATTTTTCAACCATCACTAATGCAACAAATCACTTCTCTAACCGAAACAAGTTAGGAGAAGGTGGTTTTGGACCAGTGTACAAGGGCATAATGGTAGATGGCCAAGAGATTGCTGTTAAGAGGCTTTCTAAAACATCAGGACAAGGAACTGAGGAGTTCAAAAATGAAGTAAAATTGATGGCAACACTTCAACACCGAAATCTTGTAAAACTTCTTGGTTGTTCTATTCAACATGATGAAAAGTTGTTGATCTACGAGTTCATGCCCAACAGAAGCTTGGATTACTTTATTTTTGATACTACGCGAAGTAAATTACTAAACTGGACAAAGCGCTTGGAAATTATTGACGGGATTGCTCGGGGGCTGCTGTATCTCCATCAGGATTCTACGCTCAGAATCTTACATAGAGATCTCAAGACAAGCAATATTCTTCTTGATAGTGATATGATCCCAAAGATATCAGATTTTGGTTTAGCCAGATCATTTATGGGAGATCAAGCCGAGGCTAATACAAATAGAGTGATGGGAACATACGGATATATGCCTCCAGAATACGCAGTGCATGGATCTTTCTCAATAAAATCTGATGTTTTTAGCTTTGGAGTTGTAGTACTTGAGATAATTAGCGGTAGGAAGAATCGCGGATTTTGTGACCCTCTACATCATCTAAACCTTCTTGGTCATGCATGGAGACTATGGATTGAAGATAGGCCACTGGAGTTGATGGATGAAGTATTATCTGATGCAGCCGTATGTTCGGAAATAATAAGAGTTATTCACGTAGCTCTACTGTGTGTACAACAGAAACCAGAAAATAGGCCTAACATGTCATCTGTGGTTTTTATGTTAAAGGGTGGAACGTTACTCCCGAAACCAAGTAAACCCGGGTTCTATGCAGGAAGAGATTTTACAAGTAGCACGAAATCTTCTTCGAAGGAGGGTTCAATAAATGAAGCTTCAATCTCATTGTTAGAGGCCAGATAG 2460 0.3923 MEYHNKVLMLMVCTVFFCSIMPTFSKQNTFTTIAPNQFIQYNDSLVSAAGTFEAGFFNFGDSQRQYFGIWYKSILPRTIVWVANRNTPVQNSTGLLKLNDQGTLVILDGSKGAIWSSNSSRKMVKPVVLLLLDSGNLVVKDAKSSSENEDLLWESFDYPGNTFLAGMKLKSNLVTGPYRYLTSWRSSVDPAEGECSYRIDTHGFPQLVNAKGARFLYRGGSWNGFLFTGFPWNRMRRVLNLSAVFTDKEFSYQYETLNSSTITRLVLDPYGNSQRLIWSDGSQIWAAIVSRPADQCDNYVLCGINSNCNINDFPICECLKGFMPKFQPKWDSSNWSDGCVRKTHLNCLHGDGFFKYTSMKLPDTSSSWFDKTLSLEECKTVCLKNCSCTAYANLDIRYGGSGCLLWFDNILDMRRHPNQGQDIYIRLASSEFDQLKNKRNLKRVGTLAGVIAFIIGLVVIILVILASKKKLGCIKMLFHKKETEDGELATIFDFSTITNATNHFSNRNKLGEGGFGPVYKGIMVDGQEIAVKRLSKTSGQGTEEFKNEVKLMATLQHRNLVKLLGCSIQHDEKLLIYEFMPNRSLDYFIFDTTRSKLLNWTKRLEIIDGIARGLLYLHQDSTLRILHRDLKTSNILLDSDMIPKISDFGLARSFMGDQAEANTNRVMGTYGYMPPEYAVHGSFSIKSDVFSFGVVVLEIISGRKNRGFCDPLHHLNLLGHAWRLWIEDRPLELMDEVLSDAAVCSEIIRVIHVALLCVQQKPENRPNMSSVVFMLKGGTLLPKPSKPGFYAGRDFTSSTKSSSKEGSINEASISLLEAR 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1870g00003 819 Gene3D Hepatocyte Growth Factor 344 428 - -
Vivi1870g00003 819 SMART serkin_6 504 755 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1870g00003 819 MobiDBLite consensus disorder prediction 792 819 - -
Vivi1870g00003 819 Pfam Protein tyrosine and serine/threonine kinase 507 773 IPR001245 GO:0004672|GO:0006468
Vivi1870g00003 819 ProSiteProfiles PAN/Apple domain profile. 347 428 IPR003609 -
Vivi1870g00003 819 CDD B_lectin 42 159 IPR001480 -
Vivi1870g00003 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 469 579 - -
Vivi1870g00003 819 SMART ntp_6 348 427 IPR003609 -
Vivi1870g00003 819 SUPERFAMILY alpha-D-mannose-specific plant lectins 79 190 IPR036426 -
Vivi1870g00003 819 SUPERFAMILY Protein kinase-like (PK-like) 489 775 IPR011009 -
Vivi1870g00003 819 MobiDBLite consensus disorder prediction 792 810 - -
Vivi1870g00003 819 PIRSF SRK 3 819 IPR024171 GO:0004674
Vivi1870g00003 819 Gene3D Transferase(Phosphotransferase) domain 1 580 780 - -
Vivi1870g00003 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 26 156 - -
Vivi1870g00003 819 Gene3D - 25 156 IPR036426 -
Vivi1870g00003 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 580 782 - -
Vivi1870g00003 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Vivi1870g00003 819 ProSiteProfiles Bulb-type lectin domain profile. 30 152 IPR001480 -
Vivi1870g00003 819 CDD STKc_IRAK 510 777 - -
Vivi1870g00003 819 ProSiteProfiles Protein kinase domain profile. 504 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1870g00003 819 Pfam PAN-like domain 347 413 IPR003609 -
Vivi1870g00003 819 Pfam S-locus glycoprotein domain 217 326 IPR000858 GO:0048544
Vivi1870g00003 819 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 15 766 - -
Vivi1870g00003 819 Gene3D Phosphorylase Kinase; domain 1 477 579 - -
Vivi1870g00003 819 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 346 427 - -
Vivi1870g00003 819 Pfam D-mannose binding lectin 78 185 IPR001480 -
Vivi1870g00003 819 SMART blect_4 36 159 IPR001480 -
Vivi1870g00003 819 CDD PAN_AP_plant 343 428 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1870g00003 450 789 Receptor kinase-like Gene Family AT4G23230 53.333 2.69e-122 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1870g00003 PK_Tyr_Ser-Thr 1.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1870g00003 - - vvo:131659752 1361.67