Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1870g00002 ATGGCGCCGCATGTTCTTCTCCCGCTCGGCGGTGATGGTGCAGCTTCTTTGCGGCGGCCGGAGGTTTATGCTAGAGTTTGGAAGAGAAAGAAGATGAAGGATTGTAGGGTAAAATTTGATAACTATGAAACTATTAACAGTTCAACTATTACTAGATTGGTGCTAGATTCATATGGAAATTCACAACGTCTTGTATGGTCAGATAGGACACAAATTTGGGAGGCTATATCTTCTCGTCCGATAGACCAATGTGATAATTATGTCTTGTGTGGTATCAACTCTAACTGCAATATTAATGATTTTCCAATATGTGAATGCTTGGAAGGTTTCATGCCAAAATTTAAATCGAAGTGGGAGTCATCAGATTGGTCTGATGGGTGTGTAAGGAAAACACATTTAAATTGTATCCATGGAGATGAATTTTTGAAGTACATAAACATGAAGTTGCCAGATACATCATCATCATGGTTTGACAAGAGCTTGAGCCTTGAGGAATGCAAGACTGTGTGTTTGAAAAACTGTTCTTGTACTGCGTATGCAAATTTGGATATCAGATATGGTGGTAGTGGCTGCTTACTTTGGTTTGACAACATTGTGGACATGAGAAGACATCCAGACCAAGGACAAGATATTTACATACGACTAGCATCATCAGAATTTGGCCATAAAAAGAAAAAGAGGAACTTGAAGCGTGCTGGAACTCTTGCAGGAATTATTGCATTCATTATAGGACTTACCGTTATTATATTGGTCACATCAACGTCTAGAAAGAAGCTTGGGTGTGTAAAAATGTTATTTCACAAGAAGGAGACGGAGGATGGTGAGCTGGCAACAATATTTGATTTTTCAACCATCACTGATGCAACAAATCACTTCTCTAACCGAAACAAGTTAGGAGAAGGTGGTTTTGGACCGGTGTACAAGGGCATAATGGTAGATGGCCAAGAGATTGCTGTTAAGAGGCTATCTAAAACATCAGGACAAGGAATTGAGGAGTTCAAAAATGAAGTAAAATTGATGGCAACACTTCAACACCGAAATCTTGTAAAACTTCTTGGTTGCTCTATCCAACATGATGAAAAGTTGTTGATCTACGAGTTCATGCCCAACAGAAGCTTGAATTACTTTATTTTTGATACTACGCGAAGTAAATTACTAAACTGGACAAAGCGCTTGGAAATTATTGACGGGATTGCTCGGGGTCTGCTGTATCTCCATCAGGATTCTACGCTTAGAATCATACATAGAGATCTCAAGACAAGCAATATTCTTCTTGATATTGATATGATCCCAAAGATATCAGATTTTGGTTTAGCCAGATCATTTATGGGAGATCAAGCCGAGGCTAATACAAATAGAGTGATGGGAACATATGGATATATGCCTCCAGAATATGCAGTACATGGATCTTTCTCAATAAAGTCTGATGTTTTTAGCTTTGGAGTTGTGGTACTTGAGATAATTAGCGGTAAGAAGAATCGCGGATTTTGTGACCCTCTACATCATCTAAACCTTCTTGGTCATGCATGGAGGCTATGGATTGAAGGAAGGCCACTGGAGTTAGTGGATGAAATATCATATGATGCGGCCATATGTTCAGAAATAAAAAGATTTATTCATGTGGGTCTATTGTGTGTACAAAGGAAACCAGAACATAGGCCTAACATGTCAAGTGTGGTTTTTATGTTAAAGGGTGAAAAATTACTACCAAAACCAAGTGAACCTGGGTTCTACACAGGAAGAGATAATACTAGCACAGAATCTTCTTCAAAGGAGGGTTCCATAAATGAAGCTTCAATCTCATTGTTAGAGGCCAGATAG 1821 0.3888 MAPHVLLPLGGDGAASLRRPEVYARVWKRKKMKDCRVKFDNYETINSSTITRLVLDSYGNSQRLVWSDRTQIWEAISSRPIDQCDNYVLCGINSNCNINDFPICECLEGFMPKFKSKWESSDWSDGCVRKTHLNCIHGDEFLKYINMKLPDTSSSWFDKSLSLEECKTVCLKNCSCTAYANLDIRYGGSGCLLWFDNIVDMRRHPDQGQDIYIRLASSEFGHKKKKRNLKRAGTLAGIIAFIIGLTVIILVTSTSRKKLGCVKMLFHKKETEDGELATIFDFSTITDATNHFSNRNKLGEGGFGPVYKGIMVDGQEIAVKRLSKTSGQGIEEFKNEVKLMATLQHRNLVKLLGCSIQHDEKLLIYEFMPNRSLNYFIFDTTRSKLLNWTKRLEIIDGIARGLLYLHQDSTLRIIHRDLKTSNILLDIDMIPKISDFGLARSFMGDQAEANTNRVMGTYGYMPPEYAVHGSFSIKSDVFSFGVVVLEIISGKKNRGFCDPLHHLNLLGHAWRLWIEGRPLELVDEISYDAAICSEIKRFIHVGLLCVQRKPEHRPNMSSVVFMLKGEKLLPKPSEPGFYTGRDNTSTESSSKEGSINEASISLLEAR 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1870g00002 606 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 368 571 - -
Vivi1870g00002 606 CDD STKc_IRAK 298 565 - -
Vivi1870g00002 606 ProSiteProfiles PAN/Apple domain profile. 135 216 IPR003609 -
Vivi1870g00002 606 ProSiteProfiles Protein kinase domain profile. 292 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1870g00002 606 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 80 586 - -
Vivi1870g00002 606 SUPERFAMILY Protein kinase-like (PK-like) 278 572 IPR011009 -
Vivi1870g00002 606 Pfam S-locus glycoprotein domain 41 114 IPR000858 GO:0048544
Vivi1870g00002 606 Pfam Protein tyrosine and serine/threonine kinase 295 560 IPR001245 GO:0004672|GO:0006468
Vivi1870g00002 606 Gene3D Hepatocyte Growth Factor 133 217 - -
Vivi1870g00002 606 CDD PAN_AP_plant 131 216 - -
Vivi1870g00002 606 MobiDBLite consensus disorder prediction 572 606 - -
Vivi1870g00002 606 SMART ntp_6 136 215 IPR003609 -
Vivi1870g00002 606 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 257 367 - -
Vivi1870g00002 606 SMART serkin_6 292 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi1870g00002 606 MobiDBLite consensus disorder prediction 578 597 - -
Vivi1870g00002 606 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Vivi1870g00002 606 Gene3D Transferase(Phosphotransferase) domain 1 368 570 - -
Vivi1870g00002 606 Gene3D Phosphorylase Kinase; domain 1 265 367 - -
Vivi1870g00002 606 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 134 215 - -
Vivi1870g00002 606 Pfam PAN-like domain 135 201 IPR003609 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1870g00002 280 577 Receptor kinase-like Gene Family AT4G23230 59.532 1.04e-121 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi1870g00002 PK_Tyr_Ser-Thr 5.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1870g00002 - - vvo:131659752 977.237