Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi186g00028 ATGCCGTTTGGCTTGGTCTCGGCTTGGAACAAGCGGCGAAGAAGCAAGTCTGAAGATCTTTCAGACCCTTGGATTTATAAACCGGCCGAGTTTTGGCAACTTGAAGATCAAACACCGCCACAATCTAGTAATAGGATGCATGGATCATCTGTTTTCACACTCAAAGAGATGGAAGATGCAACTTGTTCATTTAGTGATGATAATCTTGTTGGGAAAGGAGGGTTTGGTAGGGTCTATCGAGGCATTTTGAAGTCAGGAGAGGTTGTAGCTATCAAGAAAATGGAAATGGAAGCAATTAAAGCAGCAGAAGGAGAGCGTGAATTTCGAGTGGAAGTTGACATATTGAGTCTGCTAGACCACCCGAATCTTGTTTCTTTGATAGGTTATTGTGCTGATGGAAAGCATAGATTCTTAGTATATGAATATATGCATAATGGAAACCTGCAAGATCATTTGAATGGAATGAGGGAAAGGAAAATGGACTGGCCTCAAAGATTAAGAGTGGCATTAGGAGCTGCAAAAGGCCTTGCTTATCTCCACTCAAGCTCTTGTGTTGGAATTCCTATTGTTCATAGAGATTTCAAATCCACCAATATTCTTTTAGATGCCAATTTTGAAGCAAAGATATCTGATTTTGGATTTGCAAAGCTAATGCCAGAAGAGCATGAAATACATGAAACTGCCAAAGTACTTGGTACATTTGGCTATTTTGACCCGGAGTATACATCGACGGGAAAATTGACTCTACAAAGCGATGTTTATGCTTTTGGTGTTGTTCTTCTAGAGCTTTTGACAGGACGTCGAGCTATAGACCTAAACCAAGGTCCAAATGATCAAAACCTTGTACTACAAGTAAGGCACTTACTGAATGACCGCAAGATGCTCCGTAAGGTGATTGATCCAGAGATGACTAGAAATTCATACACCATTGAGTCGATATTCATGTTTGCGAATCTTGCGTCACAATGTGTTCGTCCTGAGAGTCATGTGAGACCTTCAATGATTGATTGTGTTAAAGAAATTCAAATGATTATGTATAGAAATGCAAAAGGGTTGGGAATGGTTATGCATAGTTTGAGGATGCTCTAG 1089 0.4013 MPFGLVSAWNKRRRSKSEDLSDPWIYKPAEFWQLEDQTPPQSSNRMHGSSVFTLKEMEDATCSFSDDNLVGKGGFGRVYRGILKSGEVVAIKKMEMEAIKAAEGEREFRVEVDILSLLDHPNLVSLIGYCADGKHRFLVYEYMHNGNLQDHLNGMRERKMDWPQRLRVALGAAKGLAYLHSSSCVGIPIVHRDFKSTNILLDANFEAKISDFGFAKLMPEEHEIHETAKVLGTFGYFDPEYTSTGKLTLQSDVYAFGVVLLELLTGRRAIDLNQGPNDQNLVLQVRHLLNDRKMLRKVIDPEMTRNSYTIESIFMFANLASQCVRPESHVRPSMIDCVKEIQMIMYRNAKGLGMVMHSLRML 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi186g00028 362 CDD STKc_IRAK 70 342 - -
Vivi186g00028 362 ProSitePatterns Protein kinases ATP-binding region signature. 70 93 IPR017441 GO:0005524
Vivi186g00028 362 ProSiteProfiles Protein kinase domain profile. 64 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi186g00028 362 FunFam receptor-like serine/threonine-protein kinase NCRK 143 353 - -
Vivi186g00028 362 SUPERFAMILY Protein kinase-like (PK-like) 41 347 IPR011009 -
Vivi186g00028 362 Pfam Protein kinase domain 65 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi186g00028 362 PANTHER OS01G0750732 PROTEIN 39 346 - -
Vivi186g00028 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672|GO:0006468
Vivi186g00028 362 PIRSF ILK 36 352 - -
Vivi186g00028 362 Gene3D Phosphorylase Kinase; domain 1 30 142 - -
Vivi186g00028 362 FunFam serine/threonine-protein kinase PBS1-like 32 142 - -
Vivi186g00028 362 Gene3D Transferase(Phosphotransferase) domain 1 143 354 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi186g00028 47 341 Receptor kinase-like Gene Family AT3G58690 46.333 6.05e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIb Vivi186g00028 Pkinase 5.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi186g00028 - - gmx:100820613 638.262