Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi1864g00001 ATGGAGGAGTTTGTTATGGAGGAAAAACTGATGGGTTTTTCTAACAAAGATGCAACCCATGTTGTGAAACGAAAACGCACCAAGAGGTTGAGACTTTTATCTCCTTGTGGTGTTGTTTCTACTGTATCTAGTTGTTCAAGTGGTGAAAGCAATACTGATCTTGAGGATGATGAAGAAGATATGGCTAATTGTTTGATTCTCCTTGCTCAAGGAGGAAATCACAAGCAACATGGTGGTGCTGGTGAAGATGAGGATGGTGATCATGATAACAAAAGGGAAAAGGGTAGTAATGGAAATAAAAAAATTGATGAAGTTGTAACCGCCACAAAAGGTGGTTTATATATTTATGAATGCAAAACATGTAACAGAACTTTTCCTTCTTTTCAAGCTTTGGGGGGTCACAGGGCGAGTCACAAAAAGCCTAAACTCATGGCTGAGGTGAAAAAACCACCACCATCGCCGCTGTCACAATCACAACCACAAACTTCATCACAGGATTCGCCACGAGTTAAATTACTGGTTGCGAAGTGTGATGAGTTTGAAGTAGTAGCTGAGAAGCCTCGTGGGCCAACTATTTCTTTTCATATGGGGAATCAAAGTTCGAGAGGTGTTAATGGAAACAAAGCAAAGATTCATGAGTGTTCCATTTGTGGATCGGAATTCTCATCCGGACAAGCATTGGGTGGACATATGAGAAGACATCGGACATCTTCGGCGAACACGGCTGCTGTCGCGGTGGTTGACGGAGGAGTTCGGCCGCCACGGAATATTTTACAGTTGGATCTTAACCTTCCGGCGCCGGAGGAGGATATCCGGGAAGCAAAGTTTCAGTTTCCGACACAGAAATCTATGGTTATGTCTGCTACTCCGGCTTTGGTGGATTGTCATTATTAG 894 0.4329 MEEFVMEEKLMGFSNKDATHVVKRKRTKRLRLLSPCGVVSTVSSCSSGESNTDLEDDEEDMANCLILLAQGGNHKQHGGAGEDEDGDHDNKREKGSNGNKKIDEVVTATKGGLYIYECKTCNRTFPSFQALGGHRASHKKPKLMAEVKKPPPSPLSQSQPQTSSQDSPRVKLLVAKCDEFEVVAEKPRGPTISFHMGNQSSRGVNGNKAKIHECSICGSEFSSGQALGGHMRRHRTSSANTAAVAVVDGGVRPPRNILQLDLNLPAPEEDIREAKFQFPTQKSMVMSATPALVDCHY 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi1864g00001 297 ProSitePatterns Zinc finger C2H2 type domain signature. 214 234 IPR013087 -
Vivi1864g00001 297 PANTHER ZINC FINGER PROTEIN ZAT5 49 282 - -
Vivi1864g00001 297 ProSitePatterns Zinc finger C2H2 type domain signature. 118 138 IPR013087 -
Vivi1864g00001 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 116 143 IPR013087 -
Vivi1864g00001 297 Gene3D Classic Zinc Finger 113 234 - -
Vivi1864g00001 297 MobiDBLite consensus disorder prediction 132 168 - -
Vivi1864g00001 297 SUPERFAMILY beta-beta-alpha zinc fingers 115 234 IPR036236 -
Vivi1864g00001 297 Pfam C2H2-type zinc finger 116 141 - -
Vivi1864g00001 297 Pfam C2H2-type zinc finger 212 236 - -
Vivi1864g00001 297 MobiDBLite consensus disorder prediction 73 103 - -
Vivi1864g00001 297 MobiDBLite consensus disorder prediction 77 100 - -
Vivi1864g00001 297 SMART c2h2final6 116 138 IPR013087 -
Vivi1864g00001 297 SMART c2h2final6 212 234 IPR013087 -
Vivi1864g00001 297 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 239 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi1864g00001 17 297 C2H2 Transcription Factor Family AT2G28200 38.558 1.42e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi1864g00001 zf-C2H2_6 2.4e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi1864g00001 - - aprc:113858527 282.337